Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 5' | -61.4 | NC_005337.1 | + | 97214 | 0.66 | 0.641388 |
Target: 5'- gUGGCCAUCguggucaGCCGGCACUUcgCCa--- -3' miRNA: 3'- gACCGGUAG-------CGGCCGUGGAa-GGcccu -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 56090 | 0.67 | 0.572956 |
Target: 5'- cCUGGCCAUCuaCGGCuucggcgugACgUUCaGGGAc -3' miRNA: 3'- -GACCGGUAGcgGCCG---------UGgAAGgCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 3327 | 0.67 | 0.572956 |
Target: 5'- -cGGCCA-CGCCGGCG---UCCaGGAa -3' miRNA: 3'- gaCCGGUaGCGGCCGUggaAGGcCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 94618 | 0.67 | 0.582806 |
Target: 5'- -cGGCCAUgGCCGcacagaauaucaGCACCaacaccgCCGGGu -3' miRNA: 3'- gaCCGGUAgCGGC------------CGUGGaa-----GGCCCu -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 81741 | 0.67 | 0.59269 |
Target: 5'- uCUGGCUGUcgcCGCCGGCGCCguucUCCu--- -3' miRNA: 3'- -GACCGGUA---GCGGCCGUGGa---AGGcccu -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 93125 | 0.67 | 0.59269 |
Target: 5'- aCUGcgaGCaCAUCGCCGaGCGCaucgggUUCGGGAa -3' miRNA: 3'- -GAC---CG-GUAGCGGC-CGUGga----AGGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 93278 | 0.66 | 0.612532 |
Target: 5'- -aGGCCGggggugCGUCGGCGCCUggUGGcGGu -3' miRNA: 3'- gaCCGGUa-----GCGGCCGUGGAagGCC-CU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 29938 | 0.66 | 0.622478 |
Target: 5'- --uGCCAcaaggUUGUCGGCACCga-CGGGAc -3' miRNA: 3'- gacCGGU-----AGCGGCCGUGGaagGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 15779 | 0.66 | 0.632431 |
Target: 5'- -cGGUCAccCGCaCGGuCACCg-CCGGGAa -3' miRNA: 3'- gaCCGGUa-GCG-GCC-GUGGaaGGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 19691 | 0.67 | 0.57099 |
Target: 5'- -cGGCCGcguggcguacagCGCCGGCGCCaUCUGcGGc -3' miRNA: 3'- gaCCGGUa-----------GCGGCCGUGGaAGGC-CCu -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 81692 | 0.67 | 0.553379 |
Target: 5'- uUGGCCGccagCGCCGccGCGCCguccCCGcGGAg -3' miRNA: 3'- gACCGGUa---GCGGC--CGUGGaa--GGC-CCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 42137 | 0.68 | 0.543665 |
Target: 5'- gCUGGCC--CG-CGGCGCg-UCCGGGGu -3' miRNA: 3'- -GACCGGuaGCgGCCGUGgaAGGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 64521 | 0.72 | 0.317489 |
Target: 5'- aUGGCCAcggccguccuggagcUCGUcaaggaCGGCACCUUCCuGGAc -3' miRNA: 3'- gACCGGU---------------AGCG------GCCGUGGAAGGcCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 30654 | 0.71 | 0.382485 |
Target: 5'- -aGGCUgccgCGUCGcGgGCCUUCCGGGGg -3' miRNA: 3'- gaCCGGua--GCGGC-CgUGGAAGGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 42410 | 0.69 | 0.445069 |
Target: 5'- -cGGCC-UCGCUGuGCGCCggcuucggcgugagcUUCCGGGc -3' miRNA: 3'- gaCCGGuAGCGGC-CGUGG---------------AAGGCCCu -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 98016 | 0.69 | 0.477516 |
Target: 5'- gCUGGUCG-CGCUGGcCACCgacgggCUGGGGu -3' miRNA: 3'- -GACCGGUaGCGGCC-GUGGaa----GGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 103228 | 0.68 | 0.504482 |
Target: 5'- gCUGGacaugCGUCGCCGcaaGCGCCUgggcuucUUCGGGAa -3' miRNA: 3'- -GACCg----GUAGCGGC---CGUGGA-------AGGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 1093 | 0.68 | 0.505424 |
Target: 5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3' miRNA: 3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 29377 | 0.68 | 0.524412 |
Target: 5'- -cGGCCGUCG-CGGCGCUgg-UGGGGu -3' miRNA: 3'- gaCCGGUAGCgGCCGUGGaagGCCCU- -5' |
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25573 | 5' | -61.4 | NC_005337.1 | + | 40041 | 0.68 | 0.524412 |
Target: 5'- -gGGCguCGUCGCgGuGCGCCgaaCCGGGGa -3' miRNA: 3'- gaCCG--GUAGCGgC-CGUGGaa-GGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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