miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 97614 1.08 0.001009
Target:  5'- gCUGGCCAUCGCCGGCACCUUCCGGGAc -3'
miRNA:   3'- -GACCGGUAGCGGCCGUGGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 97725 0.76 0.179126
Target:  5'- gUGGC--UCGCCGGCGCCgcccagccgCCGGGGa -3'
miRNA:   3'- gACCGguAGCGGCCGUGGaa-------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 87792 0.74 0.227958
Target:  5'- -aGGCCAagGCgCGGCugCUgcCCGGGAg -3'
miRNA:   3'- gaCCGGUagCG-GCCGugGAa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 91883 0.74 0.233417
Target:  5'- -aGGCCGcgCGCCgcGGCGCCU-CCGGGu -3'
miRNA:   3'- gaCCGGUa-GCGG--CCGUGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 133688 0.74 0.244664
Target:  5'- gUGGCguUCGCCGGCGgCUUCCGcGcGGc -3'
miRNA:   3'- gACCGguAGCGGCCGUgGAAGGC-C-CU- -5'
25573 5' -61.4 NC_005337.1 + 133688 0.74 0.244664
Target:  5'- gUGGCguUCGCCGGCGgCUUCCGcGcGGc -3'
miRNA:   3'- gACCGguAGCGGCCGUgGAAGGC-C-CU- -5'
25573 5' -61.4 NC_005337.1 + 90586 0.72 0.314676
Target:  5'- -cGGuCCGUCGUCGGCGuCCgcCCGGGc -3'
miRNA:   3'- gaCC-GGUAGCGGCCGU-GGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 64521 0.72 0.317489
Target:  5'- aUGGCCAcggccguccuggagcUCGUcaaggaCGGCACCUUCCuGGAc -3'
miRNA:   3'- gACCGGU---------------AGCG------GCCGUGGAAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 86768 0.71 0.358835
Target:  5'- aUGGCCAUCuCCGGCGuCCgcaCGGGc -3'
miRNA:   3'- gACCGGUAGcGGCCGU-GGaagGCCCu -5'
25573 5' -61.4 NC_005337.1 + 30654 0.71 0.382485
Target:  5'- -aGGCUgccgCGUCGcGgGCCUUCCGGGGg -3'
miRNA:   3'- gaCCGGua--GCGGC-CgUGGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 82159 0.7 0.407149
Target:  5'- -aGGCCAUgGCCGGCccgucgcgcACCUgcacgcggccgCCGGGc -3'
miRNA:   3'- gaCCGGUAgCGGCCG---------UGGAa----------GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 133118 0.7 0.432787
Target:  5'- -gGGCCGcucCGCCGGCGCgCUccCCGcGGAg -3'
miRNA:   3'- gaCCGGUa--GCGGCCGUG-GAa-GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 42410 0.69 0.445069
Target:  5'- -cGGCC-UCGCUGuGCGCCggcuucggcgugagcUUCCGGGc -3'
miRNA:   3'- gaCCGGuAGCGGC-CGUGG---------------AAGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 121571 0.69 0.445069
Target:  5'- --cGCCuUCGCCGaGCACCgcauguacgcgcgCCGGGAg -3'
miRNA:   3'- gacCGGuAGCGGC-CGUGGaa-----------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 115420 0.69 0.450392
Target:  5'- --cGCCGucUCGCCGGC-Cg-UCCGGGAg -3'
miRNA:   3'- gacCGGU--AGCGGCCGuGgaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 84969 0.69 0.467475
Target:  5'- aUGGCCuccagguAUCGCCGGU-CCgcCCGGGc -3'
miRNA:   3'- gACCGG-------UAGCGGCCGuGGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 101193 0.69 0.476599
Target:  5'- -gGGCCgcGUCGCUGGUgcgauGCCUgauggcgUCCGGGu -3'
miRNA:   3'- gaCCGG--UAGCGGCCG-----UGGA-------AGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 98016 0.69 0.477516
Target:  5'- gCUGGUCG-CGCUGGcCACCgacgggCUGGGGu -3'
miRNA:   3'- -GACCGGUaGCGGCC-GUGGaa----GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 131192 0.69 0.490448
Target:  5'- gCUGGCCGUCGCCGaggugcgcggaguccGCGCUagccgCCGGu- -3'
miRNA:   3'- -GACCGGUAGCGGC---------------CGUGGaa---GGCCcu -5'
25573 5' -61.4 NC_005337.1 + 38909 0.68 0.49604
Target:  5'- -cGGCCGUCGCUGuuGCCUU-CGGcGAc -3'
miRNA:   3'- gaCCGGUAGCGGCcgUGGAAgGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.