miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 98016 0.69 0.477516
Target:  5'- gCUGGUCG-CGCUGGcCACCgacgggCUGGGGu -3'
miRNA:   3'- -GACCGGUaGCGGCC-GUGGaa----GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 103228 0.68 0.504482
Target:  5'- gCUGGacaugCGUCGCCGcaaGCGCCUgggcuucUUCGGGAa -3'
miRNA:   3'- -GACCg----GUAGCGGC---CGUGGA-------AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 1093 0.68 0.505424
Target:  5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3'
miRNA:   3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 29377 0.68 0.524412
Target:  5'- -cGGCCGUCG-CGGCGCUgg-UGGGGu -3'
miRNA:   3'- gaCCGGUAGCgGCCGUGGaagGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 3327 0.67 0.572956
Target:  5'- -cGGCCA-CGCCGGCG---UCCaGGAa -3'
miRNA:   3'- gaCCGGUaGCGGCCGUggaAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 56090 0.67 0.572956
Target:  5'- cCUGGCCAUCuaCGGCuucggcgugACgUUCaGGGAc -3'
miRNA:   3'- -GACCGGUAGcgGCCG---------UGgAAGgCCCU- -5'
25573 5' -61.4 NC_005337.1 + 19691 0.67 0.57099
Target:  5'- -cGGCCGcguggcguacagCGCCGGCGCCaUCUGcGGc -3'
miRNA:   3'- gaCCGGUa-----------GCGGCCGUGGaAGGC-CCu -5'
25573 5' -61.4 NC_005337.1 + 81692 0.67 0.553379
Target:  5'- uUGGCCGccagCGCCGccGCGCCguccCCGcGGAg -3'
miRNA:   3'- gACCGGUa---GCGGC--CGUGGaa--GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 42137 0.68 0.543665
Target:  5'- gCUGGCC--CG-CGGCGCg-UCCGGGGu -3'
miRNA:   3'- -GACCGGuaGCgGCCGUGgaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 40041 0.68 0.524412
Target:  5'- -gGGCguCGUCGCgGuGCGCCgaaCCGGGGa -3'
miRNA:   3'- gaCCG--GUAGCGgC-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 121571 0.69 0.445069
Target:  5'- --cGCCuUCGCCGaGCACCgcauguacgcgcgCCGGGAg -3'
miRNA:   3'- gacCGGuAGCGGC-CGUGGaa-----------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 133118 0.7 0.432787
Target:  5'- -gGGCCGcucCGCCGGCGCgCUccCCGcGGAg -3'
miRNA:   3'- gaCCGGUa--GCGGCCGUG-GAa-GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 82159 0.7 0.407149
Target:  5'- -aGGCCAUgGCCGGCccgucgcgcACCUgcacgcggccgCCGGGc -3'
miRNA:   3'- gaCCGGUAgCGGCCG---------UGGAa----------GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 86768 0.71 0.358835
Target:  5'- aUGGCCAUCuCCGGCGuCCgcaCGGGc -3'
miRNA:   3'- gACCGGUAGcGGCCGU-GGaagGCCCu -5'
25573 5' -61.4 NC_005337.1 + 90586 0.72 0.314676
Target:  5'- -cGGuCCGUCGUCGGCGuCCgcCCGGGc -3'
miRNA:   3'- gaCC-GGUAGCGGCCGU-GGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 133688 0.74 0.244664
Target:  5'- gUGGCguUCGCCGGCGgCUUCCGcGcGGc -3'
miRNA:   3'- gACCGguAGCGGCCGUgGAAGGC-C-CU- -5'
25573 5' -61.4 NC_005337.1 + 91883 0.74 0.233417
Target:  5'- -aGGCCGcgCGCCgcGGCGCCU-CCGGGu -3'
miRNA:   3'- gaCCGGUa-GCGG--CCGUGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 87792 0.74 0.227958
Target:  5'- -aGGCCAagGCgCGGCugCUgcCCGGGAg -3'
miRNA:   3'- gaCCGGUagCG-GCCGugGAa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 97725 0.76 0.179126
Target:  5'- gUGGC--UCGCCGGCGCCgcccagccgCCGGGGa -3'
miRNA:   3'- gACCGguAGCGGCCGUGGaa-------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 103990 0.66 0.662258
Target:  5'- -cGGCCGUC-CUGGCgcucACCUgcgcgCCGuGGAc -3'
miRNA:   3'- gaCCGGUAGcGGCCG----UGGAa----GGC-CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.