Results 21 - 40 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25579 | 3' | -58.6 | NC_005337.1 | + | 133999 | 0.74 | 0.353501 |
Target: 5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3' miRNA: 3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 134060 | 0.74 | 0.353501 |
Target: 5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3' miRNA: 3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 134121 | 0.74 | 0.353501 |
Target: 5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3' miRNA: 3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 134235 | 0.74 | 0.353501 |
Target: 5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3' miRNA: 3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 113573 | 0.74 | 0.372316 |
Target: 5'- uGCUCGAguccgacgcuguaucAUGCGUCGAcggGUGCCCGCcccucugguccGCGc -3' miRNA: 3'- -CGAGCU---------------UACGCAGCU---CGCGGGCG-----------CGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 4727 | 0.73 | 0.399278 |
Target: 5'- uCUCGuacGCGUCGAgaucacggacgcucGCGCCgCGCGCGa -3' miRNA: 3'- cGAGCuuaCGCAGCU--------------CGCGG-GCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 103227 | 0.73 | 0.401791 |
Target: 5'- uGCUgGAcAUGCGUCGccgcaAGCGCCUGgGCu -3' miRNA: 3'- -CGAgCU-UACGCAGC-----UCGCGGGCgCGc -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 100392 | 0.73 | 0.402631 |
Target: 5'- uGCaUCGAGUGCG-CGGGCGCgcgcuacgagaucgaCGCGCGc -3' miRNA: 3'- -CG-AGCUUACGCaGCUCGCGg--------------GCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 58819 | 0.73 | 0.410237 |
Target: 5'- cGCUgCGccaGAU-CGUCGGGCGCgCCGUGCGg -3' miRNA: 3'- -CGA-GC---UUAcGCAGCUCGCG-GGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 3726 | 0.73 | 0.418794 |
Target: 5'- aGC-CGAuccCGUCGuugacguuGGCGCCCGCGCGc -3' miRNA: 3'- -CGaGCUuacGCAGC--------UCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 39928 | 0.73 | 0.427457 |
Target: 5'- --gCGAagguguacGUGCGcggCGGGCGCCuCGCGCGg -3' miRNA: 3'- cgaGCU--------UACGCa--GCUCGCGG-GCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 104189 | 0.72 | 0.445098 |
Target: 5'- cGCUCaccGUGCG-CGAGCGCC-GCGCc -3' miRNA: 3'- -CGAGcu-UACGCaGCUCGCGGgCGCGc -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 38624 | 0.72 | 0.454069 |
Target: 5'- gGCUCcauGUGCGUguucaagauggCGAGCggGCCCGCGCc -3' miRNA: 3'- -CGAGcu-UACGCA-----------GCUCG--CGGGCGCGc -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 11653 | 0.72 | 0.462227 |
Target: 5'- uCUCGGGcGCGUcCGAGaagaacacgccgcCGCCCGCGUGg -3' miRNA: 3'- cGAGCUUaCGCA-GCUC-------------GCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 12584 | 0.72 | 0.472301 |
Target: 5'- cGCgcgCGuucaCGUUG-GCGCCCGCGCGg -3' miRNA: 3'- -CGa--GCuuacGCAGCuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 7112 | 0.72 | 0.472301 |
Target: 5'- aCUCGcg-GaCGUCc-GCGCCCGCGCGg -3' miRNA: 3'- cGAGCuuaC-GCAGcuCGCGGGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 4121 | 0.72 | 0.481555 |
Target: 5'- cCUcCGAAaGCGcgCGAGCGCCagCGCGCGc -3' miRNA: 3'- cGA-GCUUaCGCa-GCUCGCGG--GCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 6123 | 0.71 | 0.490896 |
Target: 5'- uGCagCGGcGUGCGUcCGAGCGCguuUCGCGCGu -3' miRNA: 3'- -CGa-GCU-UACGCA-GCUCGCG---GGCGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 132188 | 0.71 | 0.50032 |
Target: 5'- cGCUgGcgcugGCGUCGAGCGCgCuCGCGg -3' miRNA: 3'- -CGAgCuua--CGCAGCUCGCGgGcGCGC- -5' |
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25579 | 3' | -58.6 | NC_005337.1 | + | 64722 | 0.71 | 0.50032 |
Target: 5'- cCUCc---GCGcCGAGCaGCCCGCGCGc -3' miRNA: 3'- cGAGcuuaCGCaGCUCG-CGGGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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