miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 94315 1.11 0.001198
Target:  5'- cGCUCGAAUGCGUCGAGCGCCCGCGCGa -3'
miRNA:   3'- -CGAGCUUACGCAGCUCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 101495 0.83 0.092607
Target:  5'- uGCUCGcgcucAUGCG-CGAGCGCuCCGCGCGg -3'
miRNA:   3'- -CGAGCu----UACGCaGCUCGCG-GGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 94837 0.79 0.188372
Target:  5'- uGCgcacCGAGcGCGgcccgagCGGGCGCCCGCGCGu -3'
miRNA:   3'- -CGa---GCUUaCGCa------GCUCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 121187 0.77 0.228684
Target:  5'- cGCgCGAuugGCGUCGccgcuuccGCGCCCGCGCGc -3'
miRNA:   3'- -CGaGCUua-CGCAGCu-------CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 29776 0.77 0.245589
Target:  5'- gGCgucCGggUGCG-CGAGCGCguagcagcgCCGCGCGa -3'
miRNA:   3'- -CGa--GCuuACGCaGCUCGCG---------GGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 80414 0.76 0.289057
Target:  5'- uGCUCGcggugGCGUCGcuggucGUGCCCGCGCu -3'
miRNA:   3'- -CGAGCuua--CGCAGCu-----CGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 45082 0.75 0.295738
Target:  5'- uGCUCGg--GCGgCGAGCGCCCG-GCa -3'
miRNA:   3'- -CGAGCuuaCGCaGCUCGCGGGCgCGc -5'
25579 3' -58.6 NC_005337.1 + 99146 0.75 0.30946
Target:  5'- gGC-CGAGUGCGcCGcacugGGCGUCCGCGCc -3'
miRNA:   3'- -CGaGCUUACGCaGC-----UCGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 9631 0.75 0.328745
Target:  5'- cGCUCGAccucgcagagcgcgAUGC--UGAGCaGCCCGCGCGu -3'
miRNA:   3'- -CGAGCU--------------UACGcaGCUCG-CGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 95498 0.74 0.338342
Target:  5'- aCUCGGGcGCGUCGGGCuccaCCGCGCa -3'
miRNA:   3'- cGAGCUUaCGCAGCUCGcg--GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 39417 0.74 0.345862
Target:  5'- uGUUCGAcacGCG-CGGGCGCCCGCuCGg -3'
miRNA:   3'- -CGAGCUua-CGCaGCUCGCGGGCGcGC- -5'
25579 3' -58.6 NC_005337.1 + 125948 0.74 0.353501
Target:  5'- uGCUCGAGgcggGCGU-GGGCGUgaaCGCGCGg -3'
miRNA:   3'- -CGAGCUUa---CGCAgCUCGCGg--GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133877 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133938 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134235 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134060 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133999 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133938 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133877 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134121 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.