miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 611 0.71 0.529048
Target:  5'- cGCaggCGAAcuccGCGUCG-GCGUCCaGCGCGg -3'
miRNA:   3'- -CGa--GCUUa---CGCAGCuCGCGGG-CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 611 0.71 0.529048
Target:  5'- cGCaggCGAAcuccGCGUCG-GCGUCCaGCGCGg -3'
miRNA:   3'- -CGa--GCUUa---CGCAGCuCGCGGG-CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 738 0.69 0.628188
Target:  5'- cGCgggCGAGaGCG-CG-GCGCCCGCGg- -3'
miRNA:   3'- -CGa--GCUUaCGCaGCuCGCGGGCGCgc -5'
25579 3' -58.6 NC_005337.1 + 738 0.69 0.628188
Target:  5'- cGCgggCGAGaGCG-CG-GCGCCCGCGg- -3'
miRNA:   3'- -CGa--GCUUaCGCaGCuCGCGGGCGCgc -5'
25579 3' -58.6 NC_005337.1 + 844 0.68 0.698115
Target:  5'- gGCUCGAcgaagGCGgcgggcagcgCGGGCGCggCCGgGCGg -3'
miRNA:   3'- -CGAGCUua---CGCa---------GCUCGCG--GGCgCGC- -5'
25579 3' -58.6 NC_005337.1 + 844 0.68 0.698115
Target:  5'- gGCUCGAcgaagGCGgcgggcagcgCGGGCGCggCCGgGCGg -3'
miRNA:   3'- -CGAGCUua---CGCa---------GCUCGCG--GGCgCGC- -5'
25579 3' -58.6 NC_005337.1 + 1464 0.69 0.608119
Target:  5'- cGUcgCGGAUcCGUUG-GCGUCCGCGCGc -3'
miRNA:   3'- -CGa-GCUUAcGCAGCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 1627 0.69 0.628188
Target:  5'- cCUCGAucgGagGUCGAugcgcGCGCCCGCgGCGa -3'
miRNA:   3'- cGAGCUua-Cg-CAGCU-----CGCGGGCG-CGC- -5'
25579 3' -58.6 NC_005337.1 + 2381 0.7 0.57816
Target:  5'- -aUCGggUGCGUCGA-CGacaCGCGCa -3'
miRNA:   3'- cgAGCuuACGCAGCUcGCgg-GCGCGc -5'
25579 3' -58.6 NC_005337.1 + 3672 0.69 0.618148
Target:  5'- -gUCGGGggucuUGCGUC--GCGCCCGaCGCGg -3'
miRNA:   3'- cgAGCUU-----ACGCAGcuCGCGGGC-GCGC- -5'
25579 3' -58.6 NC_005337.1 + 3726 0.73 0.418794
Target:  5'- aGC-CGAuccCGUCGuugacguuGGCGCCCGCGCGc -3'
miRNA:   3'- -CGaGCUuacGCAGC--------UCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 4121 0.72 0.481555
Target:  5'- cCUcCGAAaGCGcgCGAGCGCCagCGCGCGc -3'
miRNA:   3'- cGA-GCUUaCGCa-GCUCGCGG--GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 4727 0.73 0.399278
Target:  5'- uCUCGuacGCGUCGAgaucacggacgcucGCGCCgCGCGCGa -3'
miRNA:   3'- cGAGCuuaCGCAGCU--------------CGCGG-GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 5743 0.69 0.638231
Target:  5'- cGCUCGGGcucuggcacgGCGgCGGGCGgcagCCGCGCGa -3'
miRNA:   3'- -CGAGCUUa---------CGCaGCUCGCg---GGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 6123 0.71 0.490896
Target:  5'- uGCagCGGcGUGCGUcCGAGCGCguuUCGCGCGu -3'
miRNA:   3'- -CGa-GCU-UACGCA-GCUCGCG---GGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 6244 0.68 0.658295
Target:  5'- cGCgCGAGUcaGCGUCGcugacgcuGGCGCCgGCGUc -3'
miRNA:   3'- -CGaGCUUA--CGCAGC--------UCGCGGgCGCGc -5'
25579 3' -58.6 NC_005337.1 + 6377 0.68 0.678278
Target:  5'- gGCUCGGcccgcacGCGcUCGccGGCGCCgCGCGCc -3'
miRNA:   3'- -CGAGCUua-----CGC-AGC--UCGCGG-GCGCGc -5'
25579 3' -58.6 NC_005337.1 + 7112 0.72 0.472301
Target:  5'- aCUCGcg-GaCGUCc-GCGCCCGCGCGg -3'
miRNA:   3'- cGAGCuuaC-GCAGcuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 9424 0.66 0.800675
Target:  5'- aGCUCGcGgguggcggccaucUGCGccUCGA-UGCCCGUGCGg -3'
miRNA:   3'- -CGAGCuU-------------ACGC--AGCUcGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 9631 0.75 0.328745
Target:  5'- cGCUCGAccucgcagagcgcgAUGC--UGAGCaGCCCGCGCGu -3'
miRNA:   3'- -CGAGCU--------------UACGcaGCUCG-CGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.