miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 132188 0.71 0.50032
Target:  5'- cGCUgGcgcugGCGUCGAGCGCgCuCGCGg -3'
miRNA:   3'- -CGAgCuua--CGCAGCUCGCGgGcGCGC- -5'
25579 3' -58.6 NC_005337.1 + 103227 0.73 0.401791
Target:  5'- uGCUgGAcAUGCGUCGccgcaAGCGCCUGgGCu -3'
miRNA:   3'- -CGAgCU-UACGCAGC-----UCGCGGGCgCGc -5'
25579 3' -58.6 NC_005337.1 + 3726 0.73 0.418794
Target:  5'- aGC-CGAuccCGUCGuugacguuGGCGCCCGCGCGc -3'
miRNA:   3'- -CGaGCUuacGCAGC--------UCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 39928 0.73 0.427457
Target:  5'- --gCGAagguguacGUGCGcggCGGGCGCCuCGCGCGg -3'
miRNA:   3'- cgaGCU--------UACGCa--GCUCGCGG-GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 104189 0.72 0.445098
Target:  5'- cGCUCaccGUGCG-CGAGCGCC-GCGCc -3'
miRNA:   3'- -CGAGcu-UACGCaGCUCGCGGgCGCGc -5'
25579 3' -58.6 NC_005337.1 + 11653 0.72 0.462227
Target:  5'- uCUCGGGcGCGUcCGAGaagaacacgccgcCGCCCGCGUGg -3'
miRNA:   3'- cGAGCUUaCGCA-GCUC-------------GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 7112 0.72 0.472301
Target:  5'- aCUCGcg-GaCGUCc-GCGCCCGCGCGg -3'
miRNA:   3'- cGAGCuuaC-GCAGcuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 41741 0.71 0.50032
Target:  5'- aGCUCGcgcaccGCGUCcaugGGGCGgCCGCGCa -3'
miRNA:   3'- -CGAGCuua---CGCAG----CUCGCgGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 64722 0.71 0.50032
Target:  5'- cCUCc---GCGcCGAGCaGCCCGCGCGc -3'
miRNA:   3'- cGAGcuuaCGCaGCUCG-CGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134235 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134121 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 134060 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 94837 0.79 0.188372
Target:  5'- uGCgcacCGAGcGCGgcccgagCGGGCGCCCGCGCGu -3'
miRNA:   3'- -CGa---GCUUaCGCa------GCUCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 99146 0.75 0.30946
Target:  5'- gGC-CGAGUGCGcCGcacugGGCGUCCGCGCc -3'
miRNA:   3'- -CGaGCUUACGCaGC-----UCGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 9631 0.75 0.328745
Target:  5'- cGCUCGAccucgcagagcgcgAUGC--UGAGCaGCCCGCGCGu -3'
miRNA:   3'- -CGAGCU--------------UACGcaGCUCG-CGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 95498 0.74 0.338342
Target:  5'- aCUCGGGcGCGUCGGGCuccaCCGCGCa -3'
miRNA:   3'- cGAGCUUaCGCAGCUCGcg--GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 125948 0.74 0.353501
Target:  5'- uGCUCGAGgcggGCGU-GGGCGUgaaCGCGCGg -3'
miRNA:   3'- -CGAGCUUa---CGCAgCUCGCGg--GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133877 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133938 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 133999 0.74 0.353501
Target:  5'- uCUCGAgucagcccguccGUGCGUcCGuGCGUCCGUGCGu -3'
miRNA:   3'- cGAGCU------------UACGCA-GCuCGCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.