miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 129288 0.66 0.810238
Target:  5'- uGCUCGAGgcaaugcugGUGUgGGGCGCgCGCuccgGCa -3'
miRNA:   3'- -CGAGCUUa--------CGCAgCUCGCGgGCG----CGc -5'
25579 3' -58.6 NC_005337.1 + 44219 0.66 0.801552
Target:  5'- cGCcgCGGA-GCGggCGAGCGCcgaggCCGuCGCGg -3'
miRNA:   3'- -CGa-GCUUaCGCa-GCUCGCG-----GGC-GCGC- -5'
25579 3' -58.6 NC_005337.1 + 99472 0.66 0.801552
Target:  5'- uGCgCGAggGCGUCuucGUGgCCGUGCGg -3'
miRNA:   3'- -CGaGCUuaCGCAGcu-CGCgGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 103374 0.66 0.792718
Target:  5'- uGCUCGugauggacGCGgagaugGAGCGCCUGCaGCGc -3'
miRNA:   3'- -CGAGCuua-----CGCag----CUCGCGGGCG-CGC- -5'
25579 3' -58.6 NC_005337.1 + 122340 0.66 0.792718
Target:  5'- cCUCGAcgGCGc---GCGCCCGgGUGc -3'
miRNA:   3'- cGAGCUuaCGCagcuCGCGGGCgCGC- -5'
25579 3' -58.6 NC_005337.1 + 59105 0.66 0.783744
Target:  5'- uGUUCGAguuccgGUGCGuggacuUCGGGaaguucuaccUGCCCGUGCGg -3'
miRNA:   3'- -CGAGCU------UACGC------AGCUC----------GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 41395 0.66 0.774639
Target:  5'- cGCgcgCGGgcagAUGaCGUCcGGCGUCCGCGgGa -3'
miRNA:   3'- -CGa--GCU----UAC-GCAGcUCGCGGGCGCgC- -5'
25579 3' -58.6 NC_005337.1 + 73430 0.66 0.809376
Target:  5'- uGCUCGGGga-GaUCGuGCGCCaguucuuCGCGCGg -3'
miRNA:   3'- -CGAGCUUacgC-AGCuCGCGG-------GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 35047 0.66 0.818769
Target:  5'- cGCguggUGGAccGCGUCGAa-GUCCGCGCGc -3'
miRNA:   3'- -CGa---GCUUa-CGCAGCUcgCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 9424 0.66 0.800675
Target:  5'- aGCUCGcGgguggcggccaucUGCGccUCGA-UGCCCGUGCGg -3'
miRNA:   3'- -CGAGCuU-------------ACGC--AGCUcGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 117153 0.66 0.801552
Target:  5'- uGCaCGAcgGCGgcgaguucugcCGGGCGCaCuCGCGCGa -3'
miRNA:   3'- -CGaGCUuaCGCa----------GCUCGCG-G-GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 109766 0.66 0.783744
Target:  5'- gGCUUGGGcacGgGcCGAGCGCgucgCCGCGCa -3'
miRNA:   3'- -CGAGCUUa--CgCaGCUCGCG----GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 99178 0.66 0.805044
Target:  5'- cGCggaCGAugcGCGUCGAgauccGCGCCggagacgcguucucgCGCGCGg -3'
miRNA:   3'- -CGa--GCUua-CGCAGCU-----CGCGG---------------GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 41858 0.66 0.792718
Target:  5'- uGCUCGAgcagGUGCG-CGAGC-CCCaGCaCGu -3'
miRNA:   3'- -CGAGCU----UACGCaGCUCGcGGG-CGcGC- -5'
25579 3' -58.6 NC_005337.1 + 122086 0.66 0.783744
Target:  5'- cGCUCGG-UGC-UCGAccagcucgucGCGCaCgGCGCGg -3'
miRNA:   3'- -CGAGCUuACGcAGCU----------CGCG-GgCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 98039 0.66 0.801552
Target:  5'- gGCUgGggUuCGUCcggGAGCGCgCCGCGg- -3'
miRNA:   3'- -CGAgCuuAcGCAG---CUCGCG-GGCGCgc -5'
25579 3' -58.6 NC_005337.1 + 101215 0.66 0.801552
Target:  5'- uGCUucgCGGAggucGCGga-GGCGUCCGCGCGc -3'
miRNA:   3'- -CGA---GCUUa---CGCagcUCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 80201 0.66 0.783744
Target:  5'- aGCUCGc--GCGUCucguugauGAGCGCgCGCacGCGg -3'
miRNA:   3'- -CGAGCuuaCGCAG--------CUCGCGgGCG--CGC- -5'
25579 3' -58.6 NC_005337.1 + 19601 0.66 0.810238
Target:  5'- uGCguccagCGGAgagGCGgccUCGAG-GCCCGCGUu -3'
miRNA:   3'- -CGa-----GCUUa--CGC---AGCUCgCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 85582 0.66 0.809376
Target:  5'- aGUUCGAGc-CGUUG-GCGCCCcggaucuGCGCGa -3'
miRNA:   3'- -CGAGCUUacGCAGCuCGCGGG-------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.