miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 9947 0.7 0.558363
Target:  5'- -aUCGcgccGCGUCcauGAGCGCCUGCGCc -3'
miRNA:   3'- cgAGCuua-CGCAG---CUCGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 10399 0.69 0.617145
Target:  5'- uGCUCGGgcuguggagGUGCGgcugCGcccaggaGGaCGCCUGCGCGg -3'
miRNA:   3'- -CGAGCU---------UACGCa---GC-------UC-GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 11505 0.68 0.678278
Target:  5'- --gCGAAgacGCGUCGuGCGCCgggcaGCGCa -3'
miRNA:   3'- cgaGCUUa--CGCAGCuCGCGGg----CGCGc -5'
25579 3' -58.6 NC_005337.1 + 11653 0.72 0.462227
Target:  5'- uCUCGGGcGCGUcCGAGaagaacacgccgcCGCCCGCGUGg -3'
miRNA:   3'- cGAGCUUaCGCA-GCUC-------------GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 12584 0.72 0.472301
Target:  5'- cGCgcgCGuucaCGUUG-GCGCCCGCGCGg -3'
miRNA:   3'- -CGa--GCuuacGCAGCuCGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 15327 0.67 0.737081
Target:  5'- -gUgGAAUaucGCG-CGAcgcacgcuGCGCCCGCGCGa -3'
miRNA:   3'- cgAgCUUA---CGCaGCU--------CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 16050 0.67 0.737081
Target:  5'- gGCUcCGcgcacugcauGAUGaCGUCGGGCgGCuCCGCGCc -3'
miRNA:   3'- -CGA-GC----------UUAC-GCAGCUCG-CG-GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 17106 0.68 0.658295
Target:  5'- gGCgaacgCGAGgaGCGUCuccaugcGCGCCCGCGCc -3'
miRNA:   3'- -CGa----GCUUa-CGCAGcu-----CGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 18175 0.67 0.735161
Target:  5'- uGCUCGAcgaacuccaccGUGUCGguguAGCGCuCCGUGCa -3'
miRNA:   3'- -CGAGCUua---------CGCAGC----UCGCG-GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 18998 0.68 0.658295
Target:  5'- uGCUCGAcgacGCGUUcgccaGAGCGCgCGuCGCGc -3'
miRNA:   3'- -CGAGCUua--CGCAG-----CUCGCGgGC-GCGC- -5'
25579 3' -58.6 NC_005337.1 + 19601 0.66 0.810238
Target:  5'- uGCguccagCGGAgagGCGgccUCGAG-GCCCGCGUu -3'
miRNA:   3'- -CGa-----GCUUa--CGC---AGCUCgCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 21163 0.68 0.678278
Target:  5'- uGCUCGAcgccGUuCGUCGcGCGgaCCUGCGCGc -3'
miRNA:   3'- -CGAGCU----UAcGCAGCuCGC--GGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 23249 0.66 0.818769
Target:  5'- uCUCGGugaccaaGCGcaagaUCGAGCGCUaCGCGCa -3'
miRNA:   3'- cGAGCUua-----CGC-----AGCUCGCGG-GCGCGc -5'
25579 3' -58.6 NC_005337.1 + 23308 0.66 0.818769
Target:  5'- cGCaCGA---CGUCGAcGCGgCCGCGCa -3'
miRNA:   3'- -CGaGCUuacGCAGCU-CGCgGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 23887 0.67 0.737081
Target:  5'- uGUUCGccUGCcuccuccgccuGUCGcugccgcGCGCCCGCGCGc -3'
miRNA:   3'- -CGAGCuuACG-----------CAGCu------CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 24446 0.66 0.813669
Target:  5'- cGUUCGucccguacGCGUgccugcaaaucaucaCGAGuCGCCUGCGCGu -3'
miRNA:   3'- -CGAGCuua-----CGCA---------------GCUC-GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 25075 0.7 0.56824
Target:  5'- cGUUCGucaagcUGCGcgacgcCGAGCuccGCCCGCGCGg -3'
miRNA:   3'- -CGAGCuu----ACGCa-----GCUCG---CGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 25281 0.66 0.801552
Target:  5'- cGCUgGAGUucgcGCGcacggCGGGCgGgCCGCGCGu -3'
miRNA:   3'- -CGAgCUUA----CGCa----GCUCG-CgGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 25428 0.68 0.678278
Target:  5'- cGCaCGAcgGCGUgu--CGCCCGCGCGc -3'
miRNA:   3'- -CGaGCUuaCGCAgcucGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 28482 0.69 0.618148
Target:  5'- aGCaCGGAUGCGgccgCGcGGCGCgcggUCGCGCGg -3'
miRNA:   3'- -CGaGCUUACGCa---GC-UCGCG----GGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.