miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
256 5' -64.7 AC_000008.1 + 3585 0.66 0.213581
Target:  5'- uUUGCagcaGCCGCCGCCG-CCaUGaGCACc -3'
miRNA:   3'- cAGCGg---UGGCGGCGGCuGG-GC-CGUGa -5'
256 5' -64.7 AC_000008.1 + 23802 0.66 0.213034
Target:  5'- aUCGCCGCUGCCcgugccaGCCagGGCCCuuugcaGGCugUg -3'
miRNA:   3'- cAGCGGUGGCGG-------CGG--CUGGG------CCGugA- -5'
256 5' -64.7 AC_000008.1 + 33229 0.66 0.208162
Target:  5'- -cUGCUGCCGCCGCCGcUCCGuccuGCAg- -3'
miRNA:   3'- caGCGGUGGCGGCGGCuGGGC----CGUga -5'
256 5' -64.7 AC_000008.1 + 17838 0.66 0.202862
Target:  5'- aUCGCCGCgGCgauuggCGCCGuGCCCGGaauuGCa -3'
miRNA:   3'- cAGCGGUGgCG------GCGGC-UGGGCCg---UGa -5'
256 5' -64.7 AC_000008.1 + 8649 0.66 0.18766
Target:  5'- cGUCGgCGCCGCgCGCgGGCaggagCUGGUGCUg -3'
miRNA:   3'- -CAGCgGUGGCG-GCGgCUG-----GGCCGUGA- -5'
256 5' -64.7 AC_000008.1 + 19676 0.67 0.172105
Target:  5'- -cCGCCGCCGCgcguugggcggcagUGCCGGgUCGGCGg- -3'
miRNA:   3'- caGCGGUGGCG--------------GCGGCUgGGCCGUga -5'
256 5' -64.7 AC_000008.1 + 26961 0.67 0.168957
Target:  5'- cUCGCCGCCaCCGUggagCGAgCCGGaCGCg -3'
miRNA:   3'- cAGCGGUGGcGGCG----GCUgGGCC-GUGa -5'
256 5' -64.7 AC_000008.1 + 19382 0.67 0.168957
Target:  5'- cGUUGCgCGCCGCCGCCG--CUGGaUACa -3'
miRNA:   3'- -CAGCG-GUGGCGGCGGCugGGCC-GUGa -5'
256 5' -64.7 AC_000008.1 + 19566 0.67 0.164549
Target:  5'- --gGCCGCuCGUCGCCugGACCUggggGGCACa -3'
miRNA:   3'- cagCGGUG-GCGGCGG--CUGGG----CCGUGa -5'
256 5' -64.7 AC_000008.1 + 25431 0.68 0.151535
Target:  5'- -cCaCCACCGCCGCCGGCaucaccuggauguCCaGGUACa -3'
miRNA:   3'- caGcGGUGGCGGCGGCUG-------------GG-CCGUGa -5'
256 5' -64.7 AC_000008.1 + 23699 0.68 0.136127
Target:  5'- -gUGCCACCGCCagcccagguCCGGCCCcagcugccuccagGGCGCg -3'
miRNA:   3'- caGCGGUGGCGGc--------GGCUGGG-------------CCGUGa -5'
256 5' -64.7 AC_000008.1 + 18114 0.69 0.129323
Target:  5'- -aCGCgCGCCGCCGCCGG--UGGUGCg -3'
miRNA:   3'- caGCG-GUGGCGGCGGCUggGCCGUGa -5'
256 5' -64.7 AC_000008.1 + 21681 0.69 0.129323
Target:  5'- -gCGCCGCCGCCaCUGGCgCC-GCGCUc -3'
miRNA:   3'- caGCGGUGGCGGcGGCUG-GGcCGUGA- -5'
256 5' -64.7 AC_000008.1 + 11184 0.69 0.122503
Target:  5'- -aCGaaCCcCCGCggCGCCgGGCCCGGCACUa -3'
miRNA:   3'- caGC--GGuGGCG--GCGG-CUGGGCCGUGA- -5'
256 5' -64.7 AC_000008.1 + 33704 0.7 0.109853
Target:  5'- -cUGCUccuGCCGCCGCCG-CCUGGCu-- -3'
miRNA:   3'- caGCGG---UGGCGGCGGCuGGGCCGuga -5'
256 5' -64.7 AC_000008.1 + 17262 0.7 0.098435
Target:  5'- aUCGCgGaCCGCUGgCGGCgCGGCGCa -3'
miRNA:   3'- cAGCGgU-GGCGGCgGCUGgGCCGUGa -5'
256 5' -64.7 AC_000008.1 + 18776 0.7 0.095761
Target:  5'- uGUCGCCGCCagaggaGCUGCUGAgCCGccGCGCg -3'
miRNA:   3'- -CAGCGGUGG------CGGCGGCUgGGC--CGUGa -5'
256 5' -64.7 AC_000008.1 + 17516 0.72 0.072555
Target:  5'- -cCGCCGCCGUCGCCGucgccaGCCCGuGCu-- -3'
miRNA:   3'- caGCGGUGGCGGCGGC------UGGGC-CGuga -5'
256 5' -64.7 AC_000008.1 + 26142 0.72 0.06861
Target:  5'- -cCGCCGcCCGCUGCCGcccGCCaCGGUGCUc -3'
miRNA:   3'- caGCGGU-GGCGGCGGC---UGG-GCCGUGA- -5'
256 5' -64.7 AC_000008.1 + 26799 0.73 0.061332
Target:  5'- -gCGCCugCGaaacuaCGCCGucuucGCCCGGCACg -3'
miRNA:   3'- caGCGGugGCg-----GCGGC-----UGGGCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.