miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25614 5' -51.9 NC_005337.1 + 78023 0.67 0.966418
Target:  5'- gUCCGCgacguagagguugUUCUCCGucaGGuGGUugUUGGAGc -3'
miRNA:   3'- -AGGCG-------------AAGAGGU---UCuUCAugGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 86010 0.66 0.975579
Target:  5'- gCCGCaggugcgUCacgCCGAuGGAGcACCUGGAGa -3'
miRNA:   3'- aGGCGa------AGa--GGUU-CUUCaUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 88903 0.7 0.882603
Target:  5'- gCCGUc-CUCCAGGAAGU-CCUGGc- -3'
miRNA:   3'- aGGCGaaGAGGUUCUUCAuGGACCuc -5'
25614 5' -51.9 NC_005337.1 + 89863 0.66 0.975579
Target:  5'- gCUGCUUCUCCGAGcgcGcGCUggcgaUGGAGa -3'
miRNA:   3'- aGGCGAAGAGGUUCuu-CaUGG-----ACCUC- -5'
25614 5' -51.9 NC_005337.1 + 92614 0.66 0.975579
Target:  5'- gUCCGCgccuUCgCCAAGGAG---CUGGAGa -3'
miRNA:   3'- -AGGCGa---AGaGGUUCUUCaugGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 99650 0.66 0.980425
Target:  5'- cCCGCcgUCUUCAacgaggagcaGGAGGUccgcgGCCUGGGc -3'
miRNA:   3'- aGGCGa-AGAGGU----------UCUUCA-----UGGACCUc -5'
25614 5' -51.9 NC_005337.1 + 116421 0.71 0.85163
Target:  5'- gCCGCUUCUUCAAGAAGcucggcggguCCgagaaGGAGa -3'
miRNA:   3'- aGGCGAAGAGGUUCUUCau--------GGa----CCUC- -5'
25614 5' -51.9 NC_005337.1 + 126762 0.71 0.843332
Target:  5'- cCUGCU-CUUCA---GGUACCUGGAGa -3'
miRNA:   3'- aGGCGAaGAGGUucuUCAUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 127561 0.67 0.955869
Target:  5'- cCCGUggUCUCguuccugcuCGAGAAGgGCCUGGAc -3'
miRNA:   3'- aGGCGa-AGAG---------GUUCUUCaUGGACCUc -5'
25614 5' -51.9 NC_005337.1 + 131430 0.68 0.937931
Target:  5'- cUCCGCggacuccgUCUCCGcGGAGgccgcgcucgGCCUGGGc -3'
miRNA:   3'- -AGGCGa-------AGAGGUuCUUCa---------UGGACCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.