miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25617 5' -52.8 NC_005337.1 + 82516 0.66 0.971763
Target:  5'- aCGGGGCgGCCGUccagcGCC-----AGGGCGg -3'
miRNA:   3'- -GCUCCG-CGGCAa----CGGauaaaUCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 110318 0.66 0.971763
Target:  5'- aGGGcGCGCCGUucgGCCcggcc-GGGCGg -3'
miRNA:   3'- gCUC-CGCGGCAa--CGGauaaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 102779 0.66 0.968778
Target:  5'- uCGAGcGCGUCGaagggugaGCCUGUU--GGACGa -3'
miRNA:   3'- -GCUC-CGCGGCaa------CGGAUAAauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 57412 0.66 0.968778
Target:  5'- aCGAGcGCGCaCGcgGCCUAcgu-GGACu -3'
miRNA:   3'- -GCUC-CGCG-GCaaCGGAUaaauCCUGc -5'
25617 5' -52.8 NC_005337.1 + 133073 0.66 0.968778
Target:  5'- aCGcGGCGCCGgugGCCgccu--GGAUGc -3'
miRNA:   3'- -GCuCCGCGGCaa-CGGauaaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 73461 0.66 0.968778
Target:  5'- gCGGcGGUGCCGcgUGCCcgcggAGGACc -3'
miRNA:   3'- -GCU-CCGCGGCa-ACGGauaaaUCCUGc -5'
25617 5' -52.8 NC_005337.1 + 37120 0.66 0.966558
Target:  5'- cCGAGGCGCCGUcGUaggagacgacgaAGGGCa -3'
miRNA:   3'- -GCUCCGCGGCAaCGgauaaa------UCCUGc -5'
25617 5' -52.8 NC_005337.1 + 97734 0.67 0.958487
Target:  5'- --cGGCGCCGcccaGCCgccg-GGGACGc -3'
miRNA:   3'- gcuCCGCGGCaa--CGGauaaaUCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 21572 0.67 0.958109
Target:  5'- aGAGGaucgucuUGCCGgUGCCUGUgcggUAGGcCGc -3'
miRNA:   3'- gCUCC-------GCGGCaACGGAUAa---AUCCuGC- -5'
25617 5' -52.8 NC_005337.1 + 102679 0.67 0.954594
Target:  5'- uCGAGGCGCUG--GCCau----GGACGa -3'
miRNA:   3'- -GCUCCGCGGCaaCGGauaaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 69836 0.67 0.95046
Target:  5'- aGAGGCGCagaucagcGCCUuggcgUGGGGCGc -3'
miRNA:   3'- gCUCCGCGgcaa----CGGAuaa--AUCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 65873 0.67 0.95046
Target:  5'- aCGGGGUGCUGgccgcggucGCCgugaccgAGGACGg -3'
miRNA:   3'- -GCUCCGCGGCaa-------CGGauaaa--UCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 90558 0.67 0.95046
Target:  5'- --uGGCGCCGgcUGCCguacacGGACGa -3'
miRNA:   3'- gcuCCGCGGCa-ACGGauaaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 105266 0.67 0.946083
Target:  5'- uGGGGcCGCCGUgGCUgacccuGGGCGg -3'
miRNA:   3'- gCUCC-GCGGCAaCGGauaaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 119032 0.67 0.941458
Target:  5'- --cGGCGCCGgcGCCgcc--AGGACc -3'
miRNA:   3'- gcuCCGCGGCaaCGGauaaaUCCUGc -5'
25617 5' -52.8 NC_005337.1 + 48345 0.68 0.931459
Target:  5'- -cGGGCGCCGgugaaccagGCCgcgGUgguGGACGa -3'
miRNA:   3'- gcUCCGCGGCaa-------CGGa--UAaauCCUGC- -5'
25617 5' -52.8 NC_005337.1 + 99013 0.68 0.930404
Target:  5'- cCGAGGUGCgCGcgGCCUGcgaggcgcuGGACGc -3'
miRNA:   3'- -GCUCCGCG-GCaaCGGAUaaau-----CCUGC- -5'
25617 5' -52.8 NC_005337.1 + 63392 0.68 0.913365
Target:  5'- gGAGGCGCCGcUGCUggcgau-GACGa -3'
miRNA:   3'- gCUCCGCGGCaACGGauaaaucCUGC- -5'
25617 5' -52.8 NC_005337.1 + 89174 0.69 0.874115
Target:  5'- uGuGGCGCCGaggcGUCUAUUacgUAGGGCa -3'
miRNA:   3'- gCuCCGCGGCaa--CGGAUAA---AUCCUGc -5'
25617 5' -52.8 NC_005337.1 + 25032 0.7 0.858752
Target:  5'- uGAGGCGCCGUcGCCac----GGGCc -3'
miRNA:   3'- gCUCCGCGGCAaCGGauaaauCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.