Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25617 | 5' | -52.8 | NC_005337.1 | + | 102779 | 0.66 | 0.968778 |
Target: 5'- uCGAGcGCGUCGaagggugaGCCUGUU--GGACGa -3' miRNA: 3'- -GCUC-CGCGGCaa------CGGAUAAauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 133073 | 0.66 | 0.968778 |
Target: 5'- aCGcGGCGCCGgugGCCgccu--GGAUGc -3' miRNA: 3'- -GCuCCGCGGCaa-CGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 73461 | 0.66 | 0.968778 |
Target: 5'- gCGGcGGUGCCGcgUGCCcgcggAGGACc -3' miRNA: 3'- -GCU-CCGCGGCa-ACGGauaaaUCCUGc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 110318 | 0.66 | 0.971763 |
Target: 5'- aGGGcGCGCCGUucgGCCcggcc-GGGCGg -3' miRNA: 3'- gCUC-CGCGGCAa--CGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 82516 | 0.66 | 0.971763 |
Target: 5'- aCGGGGCgGCCGUccagcGCC-----AGGGCGg -3' miRNA: 3'- -GCUCCG-CGGCAa----CGGauaaaUCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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