miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 49377 0.67 0.868174
Target:  5'- cGGCGACC---GCCGCAccGCCCcCCGc -3'
miRNA:   3'- cUUGCUGGaguUGGCGUa-CGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 9472 0.67 0.868174
Target:  5'- cGGCG-CgUCcACCGCcgGCCCAUCu -3'
miRNA:   3'- cUUGCuGgAGuUGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 56968 0.67 0.868174
Target:  5'- ---gGACCcCGACUGCGUGCaggCCAUCGu -3'
miRNA:   3'- cuugCUGGaGUUGGCGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 124057 0.67 0.868174
Target:  5'- -cGCGGCUggAGCUGCcaAUGCCCcuGCCGa -3'
miRNA:   3'- cuUGCUGGagUUGGCG--UACGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 101732 0.67 0.868174
Target:  5'- aGGACauCCUCAccgugcGCCGCAcgcUGCUCACCu -3'
miRNA:   3'- -CUUGcuGGAGU------UGGCGU---ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 2785 0.67 0.868174
Target:  5'- cGAGCgcgGACCgguGCCGCAUGUgCACUa -3'
miRNA:   3'- -CUUG---CUGGaguUGGCGUACGgGUGGc -5'
25638 3' -55.8 NC_005337.1 + 125071 0.67 0.865157
Target:  5'- -uACGACCgguucuggguccgCGACCGCGUGgCCaagcaccugACCGg -3'
miRNA:   3'- cuUGCUGGa------------GUUGGCGUACgGG---------UGGC- -5'
25638 3' -55.8 NC_005337.1 + 50915 0.67 0.860568
Target:  5'- cAGCGGCCgguccgCAGCCaGUcgGCCUcCCGg -3'
miRNA:   3'- cUUGCUGGa-----GUUGG-CGuaCGGGuGGC- -5'
25638 3' -55.8 NC_005337.1 + 132069 0.67 0.860568
Target:  5'- -cGCGGCCcgGGCCGCGcccgcGUCCGCCGc -3'
miRNA:   3'- cuUGCUGGagUUGGCGUa----CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 2368 0.67 0.860568
Target:  5'- cAGC-ACCggUCGACCGCGUccacgugcgcGCCCGCCu -3'
miRNA:   3'- cUUGcUGG--AGUUGGCGUA----------CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 16066 0.67 0.860568
Target:  5'- uGAUGACgUCGGgcggcuCCGC--GCCCACCGg -3'
miRNA:   3'- cUUGCUGgAGUU------GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 50946 0.67 0.860568
Target:  5'- gGGGCG-CCUCGcGCCGC--GCCCcuaGCCGg -3'
miRNA:   3'- -CUUGCuGGAGU-UGGCGuaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 24504 0.67 0.860568
Target:  5'- cGGCGACgcgCUCgAGCC-CGUGCCCaaGCCGg -3'
miRNA:   3'- cUUGCUG---GAG-UUGGcGUACGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 129605 0.67 0.859021
Target:  5'- cGAGCGACCguggagcucgucCGGCgGCucGUGgCCGCCGg -3'
miRNA:   3'- -CUUGCUGGa-----------GUUGgCG--UACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1659 0.67 0.855903
Target:  5'- cGACGAgCUUGGCCGCcgccgcgucguugcgGUGCCCGgUGg -3'
miRNA:   3'- cUUGCUgGAGUUGGCG---------------UACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 35097 0.67 0.852751
Target:  5'- ---gGAUCUCGACgCGCAUcGUCCGCgCGg -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUA-CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 66299 0.67 0.852751
Target:  5'- --cCGAcCCUgGACCGCGUGagCGCCGc -3'
miRNA:   3'- cuuGCU-GGAgUUGGCGUACggGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 133230 0.67 0.852751
Target:  5'- --cCGGCCUC--CCGCc-GCCCGCCu -3'
miRNA:   3'- cuuGCUGGAGuuGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 65145 0.67 0.852751
Target:  5'- aGGCGGCCgccgugGACCGCG-GCUCGCCc -3'
miRNA:   3'- cUUGCUGGag----UUGGCGUaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 46137 0.67 0.852751
Target:  5'- cGGGCGGCaccaggagaUCGAgCGCGUGCuCUACCu -3'
miRNA:   3'- -CUUGCUGg--------AGUUgGCGUACG-GGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.