miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 16066 0.67 0.860568
Target:  5'- uGAUGACgUCGGgcggcuCCGC--GCCCACCGg -3'
miRNA:   3'- cUUGCUGgAGUU------GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 18810 0.67 0.836515
Target:  5'- ---gGGCUUCAGgCGCAUGUCUccgGCCGa -3'
miRNA:   3'- cuugCUGGAGUUgGCGUACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 19615 0.7 0.705488
Target:  5'- aGGCGGCCUCGAggcCCGC--GUUCACCGg -3'
miRNA:   3'- cUUGCUGGAGUU---GGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 21853 0.66 0.902864
Target:  5'- aGGCGuuCUCGuCCGCGauccagGCCUACCGc -3'
miRNA:   3'- cUUGCugGAGUuGGCGUa-----CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 21907 0.68 0.801835
Target:  5'- aGGACGcgcGCUUCAuggaggugGCCGCGcGCuCCGCCGa -3'
miRNA:   3'- -CUUGC---UGGAGU--------UGGCGUaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 22581 0.71 0.644036
Target:  5'- gGGACGACCUCuuCCGgGUcGUcgCCGCCGu -3'
miRNA:   3'- -CUUGCUGGAGuuGGCgUA-CG--GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 23321 0.69 0.745313
Target:  5'- -cGCGGCCgcgCAGCUGCGcacGCCCAaCCa -3'
miRNA:   3'- cuUGCUGGa--GUUGGCGUa--CGGGU-GGc -5'
25638 3' -55.8 NC_005337.1 + 23660 0.68 0.783523
Target:  5'- gGAGgGACCUCGACCccgGCAuccUGCUCGCg- -3'
miRNA:   3'- -CUUgCUGGAGUUGG---CGU---ACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 24064 0.67 0.844731
Target:  5'- -cGCGGCCgCGGCCGCGg--CCGCCa -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUacgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 24398 0.66 0.889676
Target:  5'- cGGACGugCUCGACCGgAagGCCgggcugugcgugCACCu -3'
miRNA:   3'- -CUUGCugGAGUUGGCgUa-CGG------------GUGGc -5'
25638 3' -55.8 NC_005337.1 + 24504 0.67 0.860568
Target:  5'- cGGCGACgcgCUCgAGCC-CGUGCCCaaGCCGg -3'
miRNA:   3'- cUUGCUG---GAG-UUGGcGUACGGG--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 24524 0.72 0.581193
Target:  5'- cGGACGACCUCGcggacguGCUGC--GCaCCGCCGa -3'
miRNA:   3'- -CUUGCUGGAGU-------UGGCGuaCG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 24887 0.72 0.582217
Target:  5'- uGGACGGCaCgccaGACCcgcGCGUGCCCGCCu -3'
miRNA:   3'- -CUUGCUG-Gag--UUGG---CGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 25508 0.66 0.902864
Target:  5'- -cGCGuCUUCAACC-CGUGUuugCCGCCGa -3'
miRNA:   3'- cuUGCuGGAGUUGGcGUACG---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 25532 0.71 0.633709
Target:  5'- cAGCGGCC-CAcgcGCCGCGagaauccgaUGUCCGCCGa -3'
miRNA:   3'- cUUGCUGGaGU---UGGCGU---------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 29664 0.71 0.613061
Target:  5'- -cGCGugCUCccgcgguggcGCCGUAUGCUCGCCGc -3'
miRNA:   3'- cuUGCugGAGu---------UGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 32761 0.66 0.902864
Target:  5'- -cACGGCCUcCAGCCGCGcggagcGCUCGCg- -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUa-----CGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 34744 0.68 0.774156
Target:  5'- --gUGACCUUGGCCuCGuUGCCCGCCc -3'
miRNA:   3'- cuuGCUGGAGUUGGcGU-ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 34968 0.66 0.896387
Target:  5'- cGACGACC-CGgcGCUGCGgaacGCCgCGCCGc -3'
miRNA:   3'- cUUGCUGGaGU--UGGCGUa---CGG-GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 35097 0.67 0.852751
Target:  5'- ---gGAUCUCGACgCGCAUcGUCCGCgCGg -3'
miRNA:   3'- cuugCUGGAGUUG-GCGUA-CGGGUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.