miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1259 0.72 0.561825
Target:  5'- cGGGCGA--UCAGCCGCAggaugGCCCGCgGa -3'
miRNA:   3'- -CUUGCUggAGUUGGCGUa----CGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 1659 0.67 0.855903
Target:  5'- cGACGAgCUUGGCCGCcgccgcgucguugcgGUGCCCGgUGg -3'
miRNA:   3'- cUUGCUgGAGUUGGCG---------------UACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 1760 0.7 0.69535
Target:  5'- aGGAcCGACCagGGCgGCAU-CCCGCCGg -3'
miRNA:   3'- -CUU-GCUGGagUUGgCGUAcGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1848 0.68 0.783523
Target:  5'- cGAGCGcGCaguuggUGGCCGCGUGUCCGCUGu -3'
miRNA:   3'- -CUUGC-UGga----GUUGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1963 0.66 0.902864
Target:  5'- cAGCGcccCCUCcGCCGcCGUGCaCGCCGg -3'
miRNA:   3'- cUUGCu--GGAGuUGGC-GUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 2003 0.68 0.810761
Target:  5'- cGGACGACCgCAGCaGCAcGgCCAUCGg -3'
miRNA:   3'- -CUUGCUGGaGUUGgCGUaCgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 2368 0.67 0.860568
Target:  5'- cAGC-ACCggUCGACCGCGUccacgugcgcGCCCGCCu -3'
miRNA:   3'- cUUGcUGG--AGUUGGCGUA----------CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 2785 0.67 0.868174
Target:  5'- cGAGCgcgGACCgguGCCGCAUGUgCACUa -3'
miRNA:   3'- -CUUG---CUGGaguUGGCGUACGgGUGGc -5'
25638 3' -55.8 NC_005337.1 + 3008 0.69 0.755041
Target:  5'- cGGACGGgCUcCGGCagCGCGUGCgCGCCGa -3'
miRNA:   3'- -CUUGCUgGA-GUUG--GCGUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 3112 0.74 0.473181
Target:  5'- -cGCGACCgCGACCGCG-GCCgGCCu -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUaCGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 6335 0.67 0.836515
Target:  5'- cAGCGACgUCAucCCGUAcaaGUCCACCGc -3'
miRNA:   3'- cUUGCUGgAGUu-GGCGUa--CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 6691 0.66 0.875564
Target:  5'- cGGCGACgUCcACgGCugcGCCCGCCu -3'
miRNA:   3'- cUUGCUGgAGuUGgCGua-CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 7874 0.68 0.819522
Target:  5'- cGGGCGGCCUUGGCCGUga--UCACCGu -3'
miRNA:   3'- -CUUGCUGGAGUUGGCGuacgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 9472 0.67 0.868174
Target:  5'- cGGCG-CgUCcACCGCcgGCCCAUCu -3'
miRNA:   3'- cUUGCuGgAGuUGGCGuaCGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 12624 0.66 0.902864
Target:  5'- -cACGACCUCGggggucGCCGCGUcGUCgauGCCGu -3'
miRNA:   3'- cuUGCUGGAGU------UGGCGUA-CGGg--UGGC- -5'
25638 3' -55.8 NC_005337.1 + 14917 0.66 0.896387
Target:  5'- uGGugGAagcagcUCUCGuggugGCCGCuGUGUCCACCGu -3'
miRNA:   3'- -CUugCU------GGAGU-----UGGCG-UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 14984 0.66 0.902864
Target:  5'- cGAACGAgUUCAugCGCA-GCUUggugaGCCGg -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGG-----UGGC- -5'
25638 3' -55.8 NC_005337.1 + 15924 0.66 0.896387
Target:  5'- aGAGCGACCgaaGACgGCggGCUUcauGCCGa -3'
miRNA:   3'- -CUUGCUGGag-UUGgCGuaCGGG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.