miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 56028 1.09 0.002683
Target:  5'- uGAACGACCUCAACCGCAUGCCCACCGa -3'
miRNA:   3'- -CUUGCUGGAGUUGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 56850 0.8 0.208055
Target:  5'- -cACGGCUUCGugCGCAUGCaCCGCCa -3'
miRNA:   3'- cuUGCUGGAGUugGCGUACG-GGUGGc -5'
25638 3' -55.8 NC_005337.1 + 88804 0.78 0.278706
Target:  5'- aGAGCGGgCUCGugCGCA-GCUCACCGa -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 91714 0.78 0.285384
Target:  5'- -cGCGGCCUcCAGCCGCA-GCCgCACCa -3'
miRNA:   3'- cuUGCUGGA-GUUGGCGUaCGG-GUGGc -5'
25638 3' -55.8 NC_005337.1 + 74482 0.77 0.306176
Target:  5'- cGACGGCCUCGuggUCGCGUGCCggCGCCGg -3'
miRNA:   3'- cUUGCUGGAGUu--GGCGUACGG--GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 102475 0.75 0.400688
Target:  5'- ----uACCUCGACCGCGUGCUCAgCGu -3'
miRNA:   3'- cuugcUGGAGUUGGCGUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 64549 0.75 0.409361
Target:  5'- aGGACGGcaccuuCCUgGACCGCGUGgCCGCCa -3'
miRNA:   3'- -CUUGCU------GGAgUUGGCGUACgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 116582 0.75 0.436067
Target:  5'- --cUGACCUC-GCC-CAUGCCCGCCa -3'
miRNA:   3'- cuuGCUGGAGuUGGcGUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 73451 0.74 0.454419
Target:  5'- -cGCGugCUCAuCCGCGUGCacgaCACCa -3'
miRNA:   3'- cuUGCugGAGUuGGCGUACGg---GUGGc -5'
25638 3' -55.8 NC_005337.1 + 90433 0.74 0.454419
Target:  5'- -cACGAUCUCcaccgcGCCGCcgGCCCGCUGc -3'
miRNA:   3'- cuUGCUGGAGu-----UGGCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 80084 0.74 0.463751
Target:  5'- cGGACGACgUCcgGugCGCGUGCCUgaaGCCGa -3'
miRNA:   3'- -CUUGCUGgAG--UugGCGUACGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 3112 0.74 0.473181
Target:  5'- -cGCGACCgCGACCGCG-GCCgGCCu -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUaCGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 72108 0.74 0.482708
Target:  5'- -uACGACCUCGAcggcguCCGCAUcCCCAUCGu -3'
miRNA:   3'- cuUGCUGGAGUU------GGCGUAcGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 55906 0.74 0.482708
Target:  5'- cGAgGGCCUCAGCgucaCGC-UGCCCACCu -3'
miRNA:   3'- cUUgCUGGAGUUG----GCGuACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 120143 0.73 0.502031
Target:  5'- cGAGCucgcgGACUUCGuCCGCGUGgCCACCGc -3'
miRNA:   3'- -CUUG-----CUGGAGUuGGCGUACgGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 58441 0.73 0.502031
Target:  5'- aGACGAUCagcggCGACCGCAUGaccuCCGCCGa -3'
miRNA:   3'- cUUGCUGGa----GUUGGCGUACg---GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 96574 0.73 0.541631
Target:  5'- uGGACGACCUCAcGCgCGCGggcGUCCACaCGg -3'
miRNA:   3'- -CUUGCUGGAGU-UG-GCGUa--CGGGUG-GC- -5'
25638 3' -55.8 NC_005337.1 + 133418 0.72 0.5517
Target:  5'- --cCGGCCgCGcCCGCGcUGCCCGCCGc -3'
miRNA:   3'- cuuGCUGGaGUuGGCGU-ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 127745 0.72 0.5517
Target:  5'- cAACGACUUCAaguccGCCGCG-GCCCugCu -3'
miRNA:   3'- cUUGCUGGAGU-----UGGCGUaCGGGugGc -5'
25638 3' -55.8 NC_005337.1 + 133418 0.72 0.5517
Target:  5'- --cCGGCCgCGcCCGCGcUGCCCGCCGc -3'
miRNA:   3'- cuuGCUGGaGUuGGCGU-ACGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.