miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 82734 0.66 0.902864
Target:  5'- -cGCGGCCUCcaggcccggcAGCCGCAcGCCgaagagCGCCa -3'
miRNA:   3'- cuUGCUGGAG----------UUGGCGUaCGG------GUGGc -5'
25638 3' -55.8 NC_005337.1 + 82636 0.66 0.875564
Target:  5'- uGGCGACCgcggagcgcCGACCGCA-GCUCgucGCCGa -3'
miRNA:   3'- cUUGCUGGa--------GUUGGCGUaCGGG---UGGC- -5'
25638 3' -55.8 NC_005337.1 + 21853 0.66 0.902864
Target:  5'- aGGCGuuCUCGuCCGCGauccagGCCUACCGc -3'
miRNA:   3'- cUUGCugGAGUuGGCGUa-----CGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 46041 0.66 0.882733
Target:  5'- -cACGACgUCu-UCGCAgcaGCCCGCCu -3'
miRNA:   3'- cuUGCUGgAGuuGGCGUa--CGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 43067 0.66 0.902864
Target:  5'- -cACGACCacgAACUGUcggAUGUCCACCGc -3'
miRNA:   3'- cuUGCUGGag-UUGGCG---UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 39810 0.66 0.896387
Target:  5'- -uGCGGCCgagCGACCcggaGC-UGCuCCGCCGc -3'
miRNA:   3'- cuUGCUGGa--GUUGG----CGuACG-GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90297 0.66 0.875564
Target:  5'- --uCGGCCUCcucGCCGCcggGCgCGCCGc -3'
miRNA:   3'- cuuGCUGGAGu--UGGCGua-CGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 124858 0.66 0.902864
Target:  5'- -cACGuCCUCGuggAUCGCAUG-CCGCCu -3'
miRNA:   3'- cuUGCuGGAGU---UGGCGUACgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 131571 0.66 0.896387
Target:  5'- cGugGACCUCAAgcCCGacaaCGUGCUCAUCu -3'
miRNA:   3'- cUugCUGGAGUU--GGC----GUACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 98021 0.66 0.874835
Target:  5'- -cGCGuaccaguguGCCUCGaagacggagacggACCGCAUGCUgGCCa -3'
miRNA:   3'- cuUGC---------UGGAGU-------------UGGCGUACGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 86431 0.66 0.889676
Target:  5'- uGGCGuCCUCggUCGCGU-CCUugCGg -3'
miRNA:   3'- cUUGCuGGAGuuGGCGUAcGGGugGC- -5'
25638 3' -55.8 NC_005337.1 + 100911 0.66 0.896387
Target:  5'- cGACGACUaCAugUGCAccaccgUGCgCACCGa -3'
miRNA:   3'- cUUGCUGGaGUugGCGU------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 69060 0.66 0.875564
Target:  5'- -uACGACCUgGACgCG-GUGCCCGgCGu -3'
miRNA:   3'- cuUGCUGGAgUUG-GCgUACGGGUgGC- -5'
25638 3' -55.8 NC_005337.1 + 51733 0.66 0.882733
Target:  5'- cGAGCuGCCU-GGCgGCAggcUGCCCGCCc -3'
miRNA:   3'- -CUUGcUGGAgUUGgCGU---ACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 14984 0.66 0.902864
Target:  5'- cGAACGAgUUCAugCGCA-GCUUggugaGCCGg -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGG-----UGGC- -5'
25638 3' -55.8 NC_005337.1 + 68299 0.66 0.875564
Target:  5'- cGGCGGCgUgGACgCGCGUGCCCGa-- -3'
miRNA:   3'- cUUGCUGgAgUUG-GCGUACGGGUggc -5'
25638 3' -55.8 NC_005337.1 + 131123 0.66 0.872635
Target:  5'- cAACGACCacaucacuugcaUCGACCGCGcgcuggacgcgagGCCgGCCGc -3'
miRNA:   3'- cUUGCUGG------------AGUUGGCGUa------------CGGgUGGC- -5'
25638 3' -55.8 NC_005337.1 + 47353 0.66 0.902864
Target:  5'- cGACGACaacaUCAuCgGCAUGCUcuuCACCGa -3'
miRNA:   3'- cUUGCUGg---AGUuGgCGUACGG---GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1963 0.66 0.902864
Target:  5'- cAGCGcccCCUCcGCCGcCGUGCaCGCCGg -3'
miRNA:   3'- cUUGCu--GGAGuUGGC-GUACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 57424 0.66 0.889676
Target:  5'- cGGACGcCCgucCAucuACCGCGUGCgcgugcgcauCCACCGc -3'
miRNA:   3'- -CUUGCuGGa--GU---UGGCGUACG----------GGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.