miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 3' -55.8 NC_005337.1 + 22581 0.71 0.644036
Target:  5'- gGGACGACCUCuuCCGgGUcGUcgCCGCCGu -3'
miRNA:   3'- -CUUGCUGGAGuuGGCgUA-CG--GGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 90877 0.71 0.613061
Target:  5'- -cGCGGCC---ACCGUcuugGUGCCCACCGc -3'
miRNA:   3'- cuUGCUGGaguUGGCG----UACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 59403 0.71 0.613061
Target:  5'- cGAUGGCCgUGACCaGCAUGCCCGCg- -3'
miRNA:   3'- cUUGCUGGaGUUGG-CGUACGGGUGgc -5'
25638 3' -55.8 NC_005337.1 + 75879 0.71 0.623382
Target:  5'- uGGCGGCCUCcgagaaCGUgcGCCCGCCGa -3'
miRNA:   3'- cUUGCUGGAGuug---GCGuaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 73460 0.71 0.623382
Target:  5'- -cGCGGCggu-GCCGCGUGCCCGCgGa -3'
miRNA:   3'- cuUGCUGgaguUGGCGUACGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 25532 0.71 0.633709
Target:  5'- cAGCGGCC-CAcgcGCCGCGagaauccgaUGUCCGCCGa -3'
miRNA:   3'- cUUGCUGGaGU---UGGCGU---------ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 97877 0.71 0.633709
Target:  5'- --cCGugCUCAACCGCAUGgUCAUgGa -3'
miRNA:   3'- cuuGCugGAGUUGGCGUACgGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 130832 0.71 0.644036
Target:  5'- aGGAC-ACgCUCGACCGCAUGUCCAagcgCGg -3'
miRNA:   3'- -CUUGcUG-GAGUUGGCGUACGGGUg---GC- -5'
25638 3' -55.8 NC_005337.1 + 97088 0.71 0.644036
Target:  5'- -uGCGugCcCAACCGCAUGCUggUGCCGc -3'
miRNA:   3'- cuUGCugGaGUUGGCGUACGG--GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 29664 0.71 0.613061
Target:  5'- -cGCGugCUCccgcgguggcGCCGUAUGCUCGCCGc -3'
miRNA:   3'- cuUGCugGAGu---------UGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 40156 0.72 0.592471
Target:  5'- -uACGugCUCAuggucaccgACCGCGUGUUCAUCGa -3'
miRNA:   3'- cuUGCugGAGU---------UGGCGUACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 79957 0.72 0.582217
Target:  5'- uGACGGCgUC-GCCGCugGUGUCCACCa -3'
miRNA:   3'- cUUGCUGgAGuUGGCG--UACGGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 88804 0.78 0.278706
Target:  5'- aGAGCGGgCUCGugCGCA-GCUCACCGa -3'
miRNA:   3'- -CUUGCUgGAGUugGCGUaCGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 74482 0.77 0.306176
Target:  5'- cGACGGCCUCGuggUCGCGUGCCggCGCCGg -3'
miRNA:   3'- cUUGCUGGAGUu--GGCGUACGG--GUGGC- -5'
25638 3' -55.8 NC_005337.1 + 64549 0.75 0.409361
Target:  5'- aGGACGGcaccuuCCUgGACCGCGUGgCCGCCa -3'
miRNA:   3'- -CUUGCU------GGAgUUGGCGUACgGGUGGc -5'
25638 3' -55.8 NC_005337.1 + 3112 0.74 0.473181
Target:  5'- -cGCGACCgCGACCGCG-GCCgGCCu -3'
miRNA:   3'- cuUGCUGGaGUUGGCGUaCGGgUGGc -5'
25638 3' -55.8 NC_005337.1 + 133418 0.72 0.5517
Target:  5'- --cCGGCCgCGcCCGCGcUGCCCGCCGc -3'
miRNA:   3'- cuuGCUGGaGUuGGCGU-ACGGGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 1259 0.72 0.561825
Target:  5'- cGGGCGA--UCAGCCGCAggaugGCCCGCgGa -3'
miRNA:   3'- -CUUGCUggAGUUGGCGUa----CGGGUGgC- -5'
25638 3' -55.8 NC_005337.1 + 759 0.72 0.561825
Target:  5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3'
miRNA:   3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5'
25638 3' -55.8 NC_005337.1 + 24524 0.72 0.581193
Target:  5'- cGGACGACCUCGcggacguGCUGC--GCaCCGCCGa -3'
miRNA:   3'- -CUUGCUGGAGU-------UGGCGuaCG-GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.