Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 3' | -55.8 | NC_005337.1 | + | 22581 | 0.71 | 0.644036 |
Target: 5'- gGGACGACCUCuuCCGgGUcGUcgCCGCCGu -3' miRNA: 3'- -CUUGCUGGAGuuGGCgUA-CG--GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 97088 | 0.71 | 0.644036 |
Target: 5'- -uGCGugCcCAACCGCAUGCUggUGCCGc -3' miRNA: 3'- cuUGCugGaGUUGGCGUACGG--GUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 24524 | 0.72 | 0.581193 |
Target: 5'- cGGACGACCUCGcggacguGCUGC--GCaCCGCCGa -3' miRNA: 3'- -CUUGCUGGAGU-------UGGCGuaCG-GGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 759 | 0.72 | 0.561825 |
Target: 5'- -cGCGGCCUCGACgGCGgccaugugcUGCgCGCCGc -3' miRNA: 3'- cuUGCUGGAGUUGgCGU---------ACGgGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 1259 | 0.72 | 0.561825 |
Target: 5'- cGGGCGA--UCAGCCGCAggaugGCCCGCgGa -3' miRNA: 3'- -CUUGCUggAGUUGGCGUa----CGGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 133418 | 0.72 | 0.5517 |
Target: 5'- --cCGGCCgCGcCCGCGcUGCCCGCCGc -3' miRNA: 3'- cuuGCUGGaGUuGGCGU-ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 3112 | 0.74 | 0.473181 |
Target: 5'- -cGCGACCgCGACCGCG-GCCgGCCu -3' miRNA: 3'- cuUGCUGGaGUUGGCGUaCGGgUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 64549 | 0.75 | 0.409361 |
Target: 5'- aGGACGGcaccuuCCUgGACCGCGUGgCCGCCa -3' miRNA: 3'- -CUUGCU------GGAgUUGGCGUACgGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 74482 | 0.77 | 0.306176 |
Target: 5'- cGACGGCCUCGuggUCGCGUGCCggCGCCGg -3' miRNA: 3'- cUUGCUGGAGUu--GGCGUACGG--GUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 88804 | 0.78 | 0.278706 |
Target: 5'- aGAGCGGgCUCGugCGCA-GCUCACCGa -3' miRNA: 3'- -CUUGCUgGAGUugGCGUaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 79957 | 0.72 | 0.582217 |
Target: 5'- uGACGGCgUC-GCCGCugGUGUCCACCa -3' miRNA: 3'- cUUGCUGgAGuUGGCG--UACGGGUGGc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 40156 | 0.72 | 0.592471 |
Target: 5'- -uACGugCUCAuggucaccgACCGCGUGUUCAUCGa -3' miRNA: 3'- cuUGCugGAGU---------UGGCGUACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 130832 | 0.71 | 0.644036 |
Target: 5'- aGGAC-ACgCUCGACCGCAUGUCCAagcgCGg -3' miRNA: 3'- -CUUGcUG-GAGUUGGCGUACGGGUg---GC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 97877 | 0.71 | 0.633709 |
Target: 5'- --cCGugCUCAACCGCAUGgUCAUgGa -3' miRNA: 3'- cuuGCugGAGUUGGCGUACgGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 25532 | 0.71 | 0.633709 |
Target: 5'- cAGCGGCC-CAcgcGCCGCGagaauccgaUGUCCGCCGa -3' miRNA: 3'- cUUGCUGGaGU---UGGCGU---------ACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 73460 | 0.71 | 0.623382 |
Target: 5'- -cGCGGCggu-GCCGCGUGCCCGCgGa -3' miRNA: 3'- cuUGCUGgaguUGGCGUACGGGUGgC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 75879 | 0.71 | 0.623382 |
Target: 5'- uGGCGGCCUCcgagaaCGUgcGCCCGCCGa -3' miRNA: 3'- cUUGCUGGAGuug---GCGuaCGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 59403 | 0.71 | 0.613061 |
Target: 5'- cGAUGGCCgUGACCaGCAUGCCCGCg- -3' miRNA: 3'- cUUGCUGGaGUUGG-CGUACGGGUGgc -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 90877 | 0.71 | 0.613061 |
Target: 5'- -cGCGGCC---ACCGUcuugGUGCCCACCGc -3' miRNA: 3'- cuUGCUGGaguUGGCG----UACGGGUGGC- -5' |
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25638 | 3' | -55.8 | NC_005337.1 | + | 29664 | 0.71 | 0.613061 |
Target: 5'- -cGCGugCUCccgcgguggcGCCGUAUGCUCGCCGc -3' miRNA: 3'- cuUGCugGAGu---------UGGCGUACGGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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