miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 66288 0.66 0.976903
Target:  5'- uGGCgc-ACGCGC-CGACCcug-GACCg -3'
miRNA:   3'- -CCGacaUGUGCGuGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 125062 0.66 0.976903
Target:  5'- cGGCacggGUACGacCGguucugggucCGCGACCgCGUGGCCa -3'
miRNA:   3'- -CCGa---CAUGU--GC----------GUGCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 984 0.66 0.976903
Target:  5'- gGGCUGgcgcgGCGCGCggagggcggGCGucGCCUgGaGGCCg -3'
miRNA:   3'- -CCGACa----UGUGCG---------UGC--UGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 39124 0.66 0.976903
Target:  5'- gGGCagcGUGCGCucGCuCGugCUUAUGACg -3'
miRNA:   3'- -CCGa--CAUGUG--CGuGCugGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 984 0.66 0.976903
Target:  5'- gGGCUGgcgcgGCGCGCggagggcggGCGucGCCUgGaGGCCg -3'
miRNA:   3'- -CCGACa----UGUGCG---------UGC--UGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 128236 0.66 0.976654
Target:  5'- aGCUGaugggGCuGCGCACGGCCcugCuggcgcccgcccgGUGACCg -3'
miRNA:   3'- cCGACa----UG-UGCGUGCUGGa--G-------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 85477 0.66 0.976403
Target:  5'- cGGCcGUGCAgguuuguCGCACGuaguUCUCGaaguccuUGACCg -3'
miRNA:   3'- -CCGaCAUGU-------GCGUGCu---GGAGU-------ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 14855 0.66 0.974327
Target:  5'- aGCgGUGCugGCGCGACgggCGaGACUu -3'
miRNA:   3'- cCGaCAUGugCGUGCUGga-GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 69233 0.66 0.974327
Target:  5'- ---cGUGCGCGCGCG-CCUggaCGUG-CCg -3'
miRNA:   3'- ccgaCAUGUGCGUGCuGGA---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 15466 0.66 0.974327
Target:  5'- uGGCUGgccaccgacgGCGCGCGCGGCacgaCGgcGCCg -3'
miRNA:   3'- -CCGACa---------UGUGCGUGCUGga--GUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 46175 0.66 0.974327
Target:  5'- cGCUGUACgACGagauCGACCagUCGUcGCCg -3'
miRNA:   3'- cCGACAUG-UGCgu--GCUGG--AGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 56016 0.66 0.974327
Target:  5'- aGCUcucGCGCGUgaACGACCUCA--ACCg -3'
miRNA:   3'- cCGAca-UGUGCG--UGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 33042 0.66 0.974327
Target:  5'- cGCga-GCACGCGCGcggacGCCUCcgcGACCu -3'
miRNA:   3'- cCGacaUGUGCGUGC-----UGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 77424 0.66 0.974327
Target:  5'- uGGCgGUGCauGCGCACGAagcCGUG-CCg -3'
miRNA:   3'- -CCGaCAUG--UGCGUGCUggaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 47255 0.66 0.974327
Target:  5'- ---cGUGCAguCGCugGACgCggaCAUGACCa -3'
miRNA:   3'- ccgaCAUGU--GCGugCUG-Ga--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 94272 0.66 0.974327
Target:  5'- -----cGCGCGgAUGGCCUCcGUGGCCu -3'
miRNA:   3'- ccgacaUGUGCgUGCUGGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 2201 0.66 0.974327
Target:  5'- cGGCggacGCGgGCGCGGCC-CG-GGCCg -3'
miRNA:   3'- -CCGaca-UGUgCGUGCUGGaGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 74972 0.66 0.974327
Target:  5'- cGGCU--ACGCGauaGCGGCCggGUcGACCa -3'
miRNA:   3'- -CCGAcaUGUGCg--UGCUGGagUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 124849 0.66 0.974059
Target:  5'- cGGCUcGUACAcguccucguggauCGCaugccgccuACGGCCUCcgagGACCu -3'
miRNA:   3'- -CCGA-CAUGU-------------GCG---------UGCUGGAGua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 36877 0.66 0.974059
Target:  5'- cGGUUGcaguagaUGCGguuCGCGCGGCgCggCGUGGCCg -3'
miRNA:   3'- -CCGAC-------AUGU---GCGUGCUG-Ga-GUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.