miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 5' -54.8 NC_005337.1 + 130509 0.66 0.910922
Target:  5'- cUGCUCgUGGGaggucauggaguuccUGGUGCgCGCGGGCGCc -3'
miRNA:   3'- cAUGAG-GUCU---------------ACCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 127661 0.66 0.902059
Target:  5'- cGUGCcggcgccucaUCCAGAUGGgcGCCGaccuGGCGCc -3'
miRNA:   3'- -CAUG----------AGGUCUACCa-UGGCgu--CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 115195 0.69 0.760504
Target:  5'- --cCUCCuGGAcacGGUGCCGCugcGGGCGCUg -3'
miRNA:   3'- cauGAGG-UCUa--CCAUGGCG---UCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 110332 0.66 0.91397
Target:  5'- -gGCccggCCGGgcGGcgucgcgcgcgccUGCCGCGGGCGCg -3'
miRNA:   3'- caUGa---GGUCuaCC-------------AUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 107074 0.72 0.574462
Target:  5'- -gGCgcgCCAGggGGUGCCGCuGuGCGCg -3'
miRNA:   3'- caUGa--GGUCuaCCAUGGCGuC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 105466 0.69 0.750662
Target:  5'- --cUUCCGGGUGGUcguGCUGC-GGCGCa -3'
miRNA:   3'- cauGAGGUCUACCA---UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 105132 0.79 0.265712
Target:  5'- -cGCUCCGGAcggccgucgccgacaUGGUGCUGCuGGCGCUg -3'
miRNA:   3'- caUGAGGUCU---------------ACCAUGGCGuCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 100057 0.66 0.888563
Target:  5'- ----aCgAGAUGGUcgACCGCcGGCACa -3'
miRNA:   3'- caugaGgUCUACCA--UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 98686 0.71 0.647832
Target:  5'- gGUGCUCCGGcgGGgauCCGCcucgcuAGGCAUc -3'
miRNA:   3'- -CAUGAGGUCuaCCau-GGCG------UCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 97906 0.67 0.874114
Target:  5'- cGUACUCCAGccagGGgccGCCGCccguGGGCGu- -3'
miRNA:   3'- -CAUGAGGUCua--CCa--UGGCG----UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 97090 0.68 0.82462
Target:  5'- cGUGC-CCAaccgcauGcUGGUGCCGCAguGGCGCUc -3'
miRNA:   3'- -CAUGaGGU-------CuACCAUGGCGU--CCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 96079 0.67 0.866544
Target:  5'- -gGCUCCGGcguacacgGGgcaCGCGGGCGCg -3'
miRNA:   3'- caUGAGGUCua------CCaugGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 89166 0.67 0.865775
Target:  5'- gGUGCUCCgcgucgucugcuuAGggGGUGCCG--GGCGCUc -3'
miRNA:   3'- -CAUGAGG-------------UCuaCCAUGGCguCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 85386 0.69 0.78927
Target:  5'- -aACUCCAGGugcgUGGUcugGCCGCcGGGCGg- -3'
miRNA:   3'- caUGAGGUCU----ACCA---UGGCG-UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 84973 0.66 0.90844
Target:  5'- --cCUCCAGGUaucgccGGU-CCGCccGGGCGCg -3'
miRNA:   3'- cauGAGGUCUA------CCAuGGCG--UCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 82611 0.68 0.807717
Target:  5'- -gGCgUCCAGG-GGcgACgGCGGGCGCUg -3'
miRNA:   3'- caUG-AGGUCUaCCa-UGgCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 80195 0.66 0.90844
Target:  5'- -cGCUCC------UGCCGCGGGCGCUg -3'
miRNA:   3'- caUGAGGucuaccAUGGCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 77368 0.66 0.90844
Target:  5'- -aGCcCCGGAUcccgcGGUGCCGCAacaccagccGGCGCc -3'
miRNA:   3'- caUGaGGUCUA-----CCAUGGCGU---------CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 74600 0.67 0.850743
Target:  5'- -gGCUcucCCGGGUcGUGCuCGCGGGCGCc -3'
miRNA:   3'- caUGA---GGUCUAcCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 68117 0.66 0.902059
Target:  5'- cGUACUCgGGGUcgcGGgGCCGguGGcCGCg -3'
miRNA:   3'- -CAUGAGgUCUA---CCaUGGCguCC-GUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.