miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 5' -54.8 NC_005337.1 + 18901 0.71 0.657281
Target:  5'- --cUUCCAGGUGcGUGcuccccaccacguCCGCGGGCACg -3'
miRNA:   3'- cauGAGGUCUAC-CAU-------------GGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 100057 0.66 0.888563
Target:  5'- ----aCgAGAUGGUcgACCGCcGGCACa -3'
miRNA:   3'- caugaGgUCUACCA--UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 59066 0.66 0.90844
Target:  5'- -gACUCCGGGUGGcUGgCGCuGGUcucGCg -3'
miRNA:   3'- caUGAGGUCUACC-AUgGCGuCCG---UGa -5'
25659 5' -54.8 NC_005337.1 + 130509 0.66 0.910922
Target:  5'- cUGCUCgUGGGaggucauggaguuccUGGUGCgCGCGGGCGCc -3'
miRNA:   3'- cAUGAG-GUCU---------------ACCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 49448 1.07 0.003955
Target:  5'- uGUACUCCAGAUGGUACCGCAGGCACUc -3'
miRNA:   3'- -CAUGAGGUCUACCAUGGCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 29635 0.82 0.180352
Target:  5'- cUugUCCAGcgugaGGUGCCGCAGGCGCa -3'
miRNA:   3'- cAugAGGUCua---CCAUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 105132 0.79 0.265712
Target:  5'- -cGCUCCGGAcggccgucgccgacaUGGUGCUGCuGGCGCUg -3'
miRNA:   3'- caUGAGGUCU---------------ACCAUGGCGuCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 11399 0.74 0.483463
Target:  5'- aUGCgCCAGGgccccgGGUuCCGCAGGCGCg -3'
miRNA:   3'- cAUGaGGUCUa-----CCAuGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 107074 0.72 0.574462
Target:  5'- -gGCgcgCCAGggGGUGCCGCuGuGCGCg -3'
miRNA:   3'- caUGa--GGUCuaCCAUGGCGuC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 97906 0.67 0.874114
Target:  5'- cGUACUCCAGccagGGgccGCCGCccguGGGCGu- -3'
miRNA:   3'- -CAUGAGGUCua--CCa--UGGCG----UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 82611 0.68 0.807717
Target:  5'- -gGCgUCCAGG-GGcgACgGCGGGCGCUg -3'
miRNA:   3'- caUG-AGGUCUaCCa-UGgCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 85386 0.69 0.78927
Target:  5'- -aACUCCAGGugcgUGGUcugGCCGCcGGGCGg- -3'
miRNA:   3'- caUGAGGUCU----ACCA---UGGCG-UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 11539 0.7 0.720516
Target:  5'- -gGCcgCCAGGUcGU-CCGCGGGCACg -3'
miRNA:   3'- caUGa-GGUCUAcCAuGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 74600 0.67 0.850743
Target:  5'- -gGCUcucCCGGGUcGUGCuCGCGGGCGCc -3'
miRNA:   3'- caUGA---GGUCUAcCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 105466 0.69 0.750662
Target:  5'- --cUUCCGGGUGGUcguGCUGC-GGCGCa -3'
miRNA:   3'- cauGAGGUCUACCA---UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 44636 0.69 0.779818
Target:  5'- cUGCUCCuGAUcGUGCgccgcaGCGGGCGCUa -3'
miRNA:   3'- cAUGAGGuCUAcCAUGg-----CGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 65514 0.67 0.866544
Target:  5'- gGUACUCgaugcggugCGGccGGUGCUGgAGGCGCa -3'
miRNA:   3'- -CAUGAG---------GUCuaCCAUGGCgUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 127661 0.66 0.902059
Target:  5'- cGUGCcggcgccucaUCCAGAUGGgcGCCGaccuGGCGCc -3'
miRNA:   3'- -CAUG----------AGGUCUACCa-UGGCgu--CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 115195 0.69 0.760504
Target:  5'- --cCUCCuGGAcacGGUGCCGCugcGGGCGCUg -3'
miRNA:   3'- cauGAGG-UCUa--CCAUGGCG---UCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 4561 0.69 0.779818
Target:  5'- -aGCUCCcgcauGAucUGcUGCCGCGGGCGCg -3'
miRNA:   3'- caUGAGGu----CU--ACcAUGGCGUCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.