miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 3' -51.6 NC_005337.1 + 44461 0.7 0.862169
Target:  5'- aGCGCcUCGCCGAGCUggaggccaGUUCgAGGcGCg -3'
miRNA:   3'- cCGUGaAGCGGUUCGA--------CAAG-UCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 115596 0.7 0.862169
Target:  5'- uGUAC-UCGCUgcccGGGCUGcgCGGGUACg -3'
miRNA:   3'- cCGUGaAGCGG----UUCGACaaGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 67186 0.71 0.845798
Target:  5'- -uCACggCGCCGGGCUGca-AGGUGCu -3'
miRNA:   3'- ccGUGaaGCGGUUCGACaagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 115340 0.71 0.828575
Target:  5'- cGGauguccCGCCu-GCUGUUCGGGUACg -3'
miRNA:   3'- -CCgugaa-GCGGuuCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 2354 0.71 0.819665
Target:  5'- cGGCGCacgauccgCGCCAGGUgcucuaUCGGGUGCg -3'
miRNA:   3'- -CCGUGaa------GCGGUUCGaca---AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 75738 0.71 0.819665
Target:  5'- aGGCACUUCcCCGGGgaGgcCAGGaUGCg -3'
miRNA:   3'- -CCGUGAAGcGGUUCgaCaaGUCC-AUG- -5'
25660 3' -51.6 NC_005337.1 + 131984 0.72 0.791851
Target:  5'- aGCugUUCGCCAAGCUccuGUUCGGc--- -3'
miRNA:   3'- cCGugAAGCGGUUCGA---CAAGUCcaug -5'
25660 3' -51.6 NC_005337.1 + 62075 0.73 0.762616
Target:  5'- gGGUgg-UCGUCGgcgaAGUUGUUCAGGUACa -3'
miRNA:   3'- -CCGugaAGCGGU----UCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 67997 0.74 0.711491
Target:  5'- cGGCGCgugCGCCAccaGGCUuUUCAGGUu- -3'
miRNA:   3'- -CCGUGaa-GCGGU---UCGAcAAGUCCAug -5'
25660 3' -51.6 NC_005337.1 + 88485 0.74 0.673456
Target:  5'- cGCGCU-CGCCAAGCUGUcugccgUCAuggacagcgccgcgcGGUACg -3'
miRNA:   3'- cCGUGAaGCGGUUCGACA------AGU---------------CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 6856 0.77 0.531061
Target:  5'- cGGCACggUCGCCAGGUgGUgcagCAGcGUGCg -3'
miRNA:   3'- -CCGUGa-AGCGGUUCGaCAa---GUC-CAUG- -5'
25660 3' -51.6 NC_005337.1 + 109390 0.78 0.481328
Target:  5'- aGGCuaugucaacacuguuCUUCGagAAGCUGUUCGGGUGCa -3'
miRNA:   3'- -CCGu--------------GAAGCggUUCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 93131 0.78 0.470471
Target:  5'- aGCACaUCGCCGAGCgcaucggGUUCGGGaACa -3'
miRNA:   3'- cCGUGaAGCGGUUCGa------CAAGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 48065 1.14 0.002973
Target:  5'- cGGCACUUCGCCAAGCUGUUCAGGUACg -3'
miRNA:   3'- -CCGUGAAGCGGUUCGACAAGUCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.