miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 101252 0.66 0.897346
Target:  5'- --uCGCGCUGGAcgGCGCggaCGcGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU--CGCGaa-GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 132113 0.66 0.897346
Target:  5'- uGGuCGCGCUGG-GUGCcgaCGUGAAc- -3'
miRNA:   3'- -CCuGCGCGGCCuCGCGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 56218 0.66 0.897346
Target:  5'- aGGACGUGgCGGAgggGCGgaUCGUGc--- -3'
miRNA:   3'- -CCUGCGCgGCCU---CGCgaAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 39165 0.66 0.897346
Target:  5'- aGGACGa-CCGcGAGCGCcUCGaGGAGu -3'
miRNA:   3'- -CCUGCgcGGC-CUCGCGaAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 59465 0.66 0.897346
Target:  5'- --cCGCGCUGGAgagGCGCaggUCcccgGUGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU---CGCGa--AG----CACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 63388 0.66 0.897346
Target:  5'- uGGugGCGCCGcaGAGCGCgc--UGGAc- -3'
miRNA:   3'- -CCugCGCGGC--CUCGCGaagcACUUcu -5'
25660 5' -56.5 NC_005337.1 + 122046 0.66 0.897346
Target:  5'- ---gGUGCC-GAGUGCcgcgUCGUGGAGAc -3'
miRNA:   3'- ccugCGCGGcCUCGCGa---AGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80039 0.66 0.897346
Target:  5'- cGGACGCGCCGGA-CGa-----GGAGAu -3'
miRNA:   3'- -CCUGCGCGGCCUcGCgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 123615 0.66 0.890759
Target:  5'- --cCGCGCuCGcGGGUGCUgacgcUCGUGGAGc -3'
miRNA:   3'- ccuGCGCG-GC-CUCGCGA-----AGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 50385 0.66 0.890759
Target:  5'- cGGGCgccugGCGCgGGGGCGCgccgcgcgUCgGUGAcGGAg -3'
miRNA:   3'- -CCUG-----CGCGgCCUCGCGa-------AG-CACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 28500 0.66 0.890759
Target:  5'- cGGCGCGCgGucGCGCggcacugCGUGggGc -3'
miRNA:   3'- cCUGCGCGgCcuCGCGaa-----GCACuuCu -5'
25660 5' -56.5 NC_005337.1 + 66095 0.66 0.890759
Target:  5'- cGGAgGCGCugugCGGcgucuGCGCgcgCGUGGAGu -3'
miRNA:   3'- -CCUgCGCG----GCCu----CGCGaa-GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 96382 0.66 0.890759
Target:  5'- cGGuCGCGCCcGAGCagGCggCG-GAGGAc -3'
miRNA:   3'- -CCuGCGCGGcCUCG--CGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 126926 0.66 0.890759
Target:  5'- aGACGCuGCUGGAggcggGCGCggaCGUGAAc- -3'
miRNA:   3'- cCUGCG-CGGCCU-----CGCGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 15707 0.66 0.890759
Target:  5'- cGACGUGCCGGAcgucGUGCgagcgCGcGAGGu -3'
miRNA:   3'- cCUGCGCGGCCU----CGCGaa---GCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 39550 0.66 0.890088
Target:  5'- cGGCGCcCCGGcgGGCGCUcggguacucguccUCGUGGAc- -3'
miRNA:   3'- cCUGCGcGGCC--UCGCGA-------------AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 4229 0.66 0.884638
Target:  5'- cGGACGuCGCCGGgugaguguucAGCGCggcgaccgcggccgCGUGAu-- -3'
miRNA:   3'- -CCUGC-GCGGCC----------UCGCGaa------------GCACUucu -5'
25660 5' -56.5 NC_005337.1 + 88030 0.66 0.883947
Target:  5'- aGGAUGUGCCGGcgcacGUGCacggggUCGUGcuGGAu -3'
miRNA:   3'- -CCUGCGCGGCCu----CGCGa-----AGCACu-UCU- -5'
25660 5' -56.5 NC_005337.1 + 67464 0.66 0.883947
Target:  5'- cGGCGCaGCCGc--CGCUUCGUcGAGGGc -3'
miRNA:   3'- cCUGCG-CGGCcucGCGAAGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 75617 0.66 0.883947
Target:  5'- gGGA-GCGCCgaGGAcGCGCgggccgUCGUGAuGGg -3'
miRNA:   3'- -CCUgCGCGG--CCU-CGCGa-----AGCACUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.