miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 48099 1.11 0.001892
Target:  5'- cGGACGCGCCGGAGCGCUUCGUGAAGAc -3'
miRNA:   3'- -CCUGCGCGGCCUCGCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 73916 0.83 0.147287
Target:  5'- aGAUGcCGCUGGGGCGCaUCGUGggGAa -3'
miRNA:   3'- cCUGC-GCGGCCUCGCGaAGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 2686 0.78 0.272741
Target:  5'- aGGACGU-CCGGAGCuGCggCGUGggGAc -3'
miRNA:   3'- -CCUGCGcGGCCUCG-CGaaGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 22659 0.78 0.292537
Target:  5'- cGGACGCGCggcugcgGGAGCGCUUCGcgGAcauGGAc -3'
miRNA:   3'- -CCUGCGCGg------CCUCGCGAAGCa-CU---UCU- -5'
25660 5' -56.5 NC_005337.1 + 88263 0.77 0.306347
Target:  5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3'
miRNA:   3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 78555 0.76 0.33545
Target:  5'- cGGGCGCGCCGu-GCGCgUCGUgcuuGAAGAu -3'
miRNA:   3'- -CCUGCGCGGCcuCGCGaAGCA----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 42542 0.76 0.358571
Target:  5'- cGGACGCGCUGcGGGCGCUggugCGgcugcggcUGGAGGc -3'
miRNA:   3'- -CCUGCGCGGC-CUCGCGAa---GC--------ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 55360 0.76 0.374594
Target:  5'- -cGCGCGCUcuucgaGGAGCGCUcCGUGAAGu -3'
miRNA:   3'- ccUGCGCGG------CCUCGCGAaGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 87906 0.75 0.408061
Target:  5'- uGACGCGCUGGcgcgccugcgccGGCGCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCC------------UCGCGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 31765 0.75 0.425481
Target:  5'- cGugGCGUCGGAGCuGCU-CGgGAGGAg -3'
miRNA:   3'- cCugCGCGGCCUCG-CGAaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 64273 0.74 0.443337
Target:  5'- cGGGCGCGCCGGAGCaacuGCUcuUCGaccgucUGAGcGAg -3'
miRNA:   3'- -CCUGCGCGGCCUCG----CGA--AGC------ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 95348 0.74 0.461607
Target:  5'- ---aGCGCCGGAGCGCcgagUCGccGAAGGc -3'
miRNA:   3'- ccugCGCGGCCUCGCGa---AGCa-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 106642 0.72 0.567172
Target:  5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3'
miRNA:   3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 132766 0.72 0.568177
Target:  5'- cGGACGCGCUGGcGCGCgccgagGUGAcGGu -3'
miRNA:   3'- -CCUGCGCGGCCuCGCGaag---CACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 84570 0.72 0.578243
Target:  5'- cGGCGCGCCgagcccGGGGCGCUggUGUGGGuGAc -3'
miRNA:   3'- cCUGCGCGG------CCUCGCGAa-GCACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 117160 0.72 0.578243
Target:  5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3'
miRNA:   3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 102889 0.72 0.588347
Target:  5'- uGAUGCGCCGcGAGgGCggCaUGAAGAg -3'
miRNA:   3'- cCUGCGCGGC-CUCgCGaaGcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88336 0.71 0.608644
Target:  5'- -cGCGCGCCGGcGCGCg-CGaGAAGAc -3'
miRNA:   3'- ccUGCGCGGCCuCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88442 0.71 0.608644
Target:  5'- cGGACGCGCCGGu-CGCggaacacgcCGUcGAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCucGCGaa-------GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 69247 0.71 0.62901
Target:  5'- uGGACGUGCCGGuGaCGCUg-GUGguGGg -3'
miRNA:   3'- -CCUGCGCGGCCuC-GCGAagCACuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.