miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 2204 0.66 0.865958
Target:  5'- cGGACGCgggcgcggcccggGCCGcGAGCGCgcgcaggaaccgCGcGAGGAa -3'
miRNA:   3'- -CCUGCG-------------CGGC-CUCGCGaa----------GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 2652 0.66 0.88186
Target:  5'- aGGugGCGCCGGccgccuccacgcugAGUGCgcgCGagcugucGAAGAu -3'
miRNA:   3'- -CCugCGCGGCC--------------UCGCGaa-GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 2686 0.78 0.272741
Target:  5'- aGGACGU-CCGGAGCuGCggCGUGggGAc -3'
miRNA:   3'- -CCUGCGcGGCCUCG-CGaaGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 4229 0.66 0.884638
Target:  5'- cGGACGuCGCCGGgugaguguucAGCGCggcgaccgcggccgCGUGAu-- -3'
miRNA:   3'- -CCUGC-GCGGCC----------UCGCGaa------------GCACUucu -5'
25660 5' -56.5 NC_005337.1 + 7867 0.67 0.821935
Target:  5'- -cGCGCGCCGG-GCGgcCUUggccgugaucacCGUGAAGGg -3'
miRNA:   3'- ccUGCGCGGCCuCGC--GAA------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 10329 0.69 0.739414
Target:  5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3'
miRNA:   3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 10440 0.68 0.795665
Target:  5'- -uGCGCGgCGGuGCGCgcgUCGUGcgccAGGAc -3'
miRNA:   3'- ccUGCGCgGCCuCGCGa--AGCAC----UUCU- -5'
25660 5' -56.5 NC_005337.1 + 13353 0.66 0.869663
Target:  5'- gGGcACGCGCCGGGacaCGCggCGUucAGAc -3'
miRNA:   3'- -CC-UGCGCGGCCUc--GCGaaGCAcuUCU- -5'
25660 5' -56.5 NC_005337.1 + 13652 0.67 0.83036
Target:  5'- aGGACGCGCgGGAuGgGCa---UGAAGAa -3'
miRNA:   3'- -CCUGCGCGgCCU-CgCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 14282 0.67 0.854533
Target:  5'- uGGuCGUGa-GGAGCGaCUUCGUGucauGGAu -3'
miRNA:   3'- -CCuGCGCggCCUCGC-GAAGCACu---UCU- -5'
25660 5' -56.5 NC_005337.1 + 15707 0.66 0.890759
Target:  5'- cGACGUGCCGGAcgucGUGCgagcgCGcGAGGu -3'
miRNA:   3'- cCUGCGCGGCCU----CGCGaa---GCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 18903 0.67 0.854533
Target:  5'- -cACGCGCUGGAGCGUcgCGggcuuGAg -3'
miRNA:   3'- ccUGCGCGGCCUCGCGaaGCacuu-CU- -5'
25660 5' -56.5 NC_005337.1 + 20796 0.7 0.66565
Target:  5'- cGGGCGUGCCGGAGCuggacagGAAGGu -3'
miRNA:   3'- -CCUGCGCGGCCUCGcgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 21809 0.7 0.699938
Target:  5'- cGACGCGCCGcAGCuCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCcUCGcGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 22659 0.78 0.292537
Target:  5'- cGGACGCGCggcugcgGGAGCGCUUCGcgGAcauGGAc -3'
miRNA:   3'- -CCUGCGCGg------CCUCGCGAAGCa-CU---UCU- -5'
25660 5' -56.5 NC_005337.1 + 23048 0.66 0.876913
Target:  5'- cGGAgGCGCCcuucaGGAugGCGCU-CGUGGGc- -3'
miRNA:   3'- -CCUgCGCGG-----CCU--CGCGAaGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 28500 0.66 0.890759
Target:  5'- cGGCGCGCgGucGCGCggcacugCGUGggGc -3'
miRNA:   3'- cCUGCGCGgCcuCGCGaa-----GCACuuCu -5'
25660 5' -56.5 NC_005337.1 + 29149 0.66 0.862201
Target:  5'- cGACGgcCGuCCGGAGCGCcgcgUCGUccagcuccGGAGAc -3'
miRNA:   3'- cCUGC--GC-GGCCUCGCGa---AGCA--------CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.