miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 133742 0.66 0.861443
Target:  5'- aGugGCGCCggcagcuGGAGCGCcugCGccgcGAGGAg -3'
miRNA:   3'- cCugCGCGG-------CCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 133742 0.66 0.861443
Target:  5'- aGugGCGCCggcagcuGGAGCGCcugCGccgcGAGGAg -3'
miRNA:   3'- cCugCGCGG-------CCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 132766 0.72 0.568177
Target:  5'- cGGACGCGCUGGcGCGCgccgagGUGAcGGu -3'
miRNA:   3'- -CCUGCGCGGCCuCGCGaag---CACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 132173 0.67 0.838606
Target:  5'- cGGACGCGaCGGAgGCGCUggCGcUGgcGu -3'
miRNA:   3'- -CCUGCGCgGCCU-CGCGAa-GC-ACuuCu -5'
25660 5' -56.5 NC_005337.1 + 132113 0.66 0.897346
Target:  5'- uGGuCGCGCUGG-GUGCcgaCGUGAAc- -3'
miRNA:   3'- -CCuGCGCGGCCuCGCGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 131397 0.69 0.749074
Target:  5'- cGGACGcCGCCGGccaCGCUg-GUGAGGc -3'
miRNA:   3'- -CCUGC-GCGGCCuc-GCGAagCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 131180 0.68 0.786605
Target:  5'- uGAUGCGCgCGGAggagggccaGCGCcccucCGUGGAGAu -3'
miRNA:   3'- cCUGCGCG-GCCU---------CGCGaa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 129210 0.66 0.876913
Target:  5'- uGGACGCcCCaGAGCGCUgcuGUGGc-- -3'
miRNA:   3'- -CCUGCGcGGcCUCGCGAag-CACUucu -5'
25660 5' -56.5 NC_005337.1 + 126926 0.66 0.890759
Target:  5'- aGACGCuGCUGGAggcggGCGCggaCGUGAAc- -3'
miRNA:   3'- cCUGCG-CGGCCU-----CGCGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 123615 0.66 0.890759
Target:  5'- --cCGCGCuCGcGGGUGCUgacgcUCGUGGAGc -3'
miRNA:   3'- ccuGCGCG-GC-CUCGCGA-----AGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 122290 0.66 0.876913
Target:  5'- gGGACGCGgaGGAGCuccgcgagGCgggCGUGAAc- -3'
miRNA:   3'- -CCUGCGCggCCUCG--------CGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 122046 0.66 0.897346
Target:  5'- ---gGUGCC-GAGUGCcgcgUCGUGGAGAc -3'
miRNA:   3'- ccugCGCGGcCUCGCGa---AGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 121817 0.66 0.876913
Target:  5'- uGGACGaguucgguaugaCGCCGGccgacGUGC-UCGUGAAGu -3'
miRNA:   3'- -CCUGC------------GCGGCCu----CGCGaAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 120460 0.67 0.821935
Target:  5'- gGGGCGCGCUcGAGCGCg-CGcUGGAu- -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaaGC-ACUUcu -5'
25660 5' -56.5 NC_005337.1 + 119639 0.71 0.62901
Target:  5'- aGGACGCcUCGGuGCGCUUCGUc---- -3'
miRNA:   3'- -CCUGCGcGGCCuCGCGAAGCAcuucu -5'
25660 5' -56.5 NC_005337.1 + 117160 0.72 0.578243
Target:  5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3'
miRNA:   3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 116763 0.67 0.83779
Target:  5'- aGGACaccuGCGCCGGAacaacaaGCGCUgCGUGu--- -3'
miRNA:   3'- -CCUG----CGCGGCCU-------CGCGAaGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 110365 0.7 0.679826
Target:  5'- cGGGCGCGCgGGcGCGCggcagCGacaggcgGAGGAg -3'
miRNA:   3'- -CCUGCGCGgCCuCGCGaa---GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 108996 0.7 0.695932
Target:  5'- cGGACGCugGCCgaGGAGgGCUcgcggaacgugggCGUGGAGAu -3'
miRNA:   3'- -CCUGCG--CGG--CCUCgCGAa------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 106642 0.72 0.567172
Target:  5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3'
miRNA:   3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.