Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25661 | 3' | -56 | NC_005337.1 | + | 59183 | 0.67 | 0.825459 |
Target: 5'- cCGUGCgucggggcaccgGCGACGgcUGGaugGUGCAgaaggCCGCGg -3' miRNA: 3'- -GCACG------------UGCUGC--ACCa--CACGUa----GGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 61216 | 0.68 | 0.816842 |
Target: 5'- gGUGCACGACgGUGGcGaUGgAcagCCGCAg -3' miRNA: 3'- gCACGUGCUG-CACCaC-ACgUa--GGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 68499 | 0.66 | 0.880388 |
Target: 5'- gCGcUGCugGCGGcCGUGG-GUGCGcCCGCGc -3' miRNA: 3'- -GC-ACG--UGCU-GCACCaCACGUaGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 69082 | 0.69 | 0.765688 |
Target: 5'- gGUGCACGAgcacgagcucuaccuCGUGGUGcaccuCGUCUGCGg -3' miRNA: 3'- gCACGUGCU---------------GCACCACac---GUAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 70360 | 0.69 | 0.742518 |
Target: 5'- gGUGCGCcgccgcACGUGGUc-GCGUCCGUAg -3' miRNA: 3'- gCACGUGc-----UGCACCAcaCGUAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 71279 | 0.71 | 0.641382 |
Target: 5'- -aUGCGCcGCGUGGcgcugGUGCGcuUCCGCAc -3' miRNA: 3'- gcACGUGcUGCACCa----CACGU--AGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 72426 | 0.74 | 0.461819 |
Target: 5'- aCGaGCACGGCGUGaGcGUGC-UCCGCGa -3' miRNA: 3'- -GCaCGUGCUGCAC-CaCACGuAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 72606 | 0.66 | 0.880388 |
Target: 5'- uCGcGCGCgGGCGUGGUgGUGC--CCGCc -3' miRNA: 3'- -GCaCGUG-CUGCACCA-CACGuaGGCGu -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 73364 | 0.67 | 0.825459 |
Target: 5'- gCGUGCcCGAcCGUGGccGUGC--CCGCAc -3' miRNA: 3'- -GCACGuGCU-GCACCa-CACGuaGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 77471 | 0.66 | 0.873166 |
Target: 5'- gCGUGCGCGGCGacgcgucccgGGgcgGUGCAUggCgGCGa -3' miRNA: 3'- -GCACGUGCUGCa---------CCa--CACGUA--GgCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 80273 | 0.68 | 0.799105 |
Target: 5'- gCGUGCGCGACGcGGUG---AUCCGg- -3' miRNA: 3'- -GCACGUGCUGCaCCACacgUAGGCgu -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 84262 | 0.71 | 0.641382 |
Target: 5'- uGUGCGuCGACGUGGUcaccguuccgucGUGCAccaucaccuucUCCGUg -3' miRNA: 3'- gCACGU-GCUGCACCA------------CACGU-----------AGGCGu -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 86416 | 0.68 | 0.790004 |
Target: 5'- cCG-GCGCGAUGUGGaUG-GCGUCCuCGg -3' miRNA: 3'- -GCaCGUGCUGCACC-ACaCGUAGGcGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 92593 | 0.7 | 0.661947 |
Target: 5'- aCGUGCuucgACGACGUGGa---CGUCCGCGc -3' miRNA: 3'- -GCACG----UGCUGCACCacacGUAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 97807 | 0.69 | 0.75128 |
Target: 5'- cCGUGCGgcAgGUGGUgaagaccGUGCGUCCGCc -3' miRNA: 3'- -GCACGUgcUgCACCA-------CACGUAGGCGu -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 99469 | 0.67 | 0.858072 |
Target: 5'- gCGUGCGCGAgggcgucuuCGUGGccGUGCGgcgcuaCGCGg -3' miRNA: 3'- -GCACGUGCU---------GCACCa-CACGUag----GCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 103897 | 0.68 | 0.799105 |
Target: 5'- cCGcGCGCGACaUGGacGUGC-UCCGCGu -3' miRNA: 3'- -GCaCGUGCUGcACCa-CACGuAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 105167 | 0.71 | 0.651673 |
Target: 5'- gCGcUGCACGGCGUGGUcgaccccUGCuucgcgggGUCCGCGg -3' miRNA: 3'- -GC-ACGUGCUGCACCAc------ACG--------UAGGCGU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 108127 | 0.71 | 0.610498 |
Target: 5'- aCGcUGguCGGCGUGGUG-GUGUCCGaCAa -3' miRNA: 3'- -GC-ACguGCUGCACCACaCGUAGGC-GU- -5' |
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25661 | 3' | -56 | NC_005337.1 | + | 109470 | 0.66 | 0.900694 |
Target: 5'- gCGUGCGCG-CGUGG-GcGCGcuUCCGgAu -3' miRNA: 3'- -GCACGUGCuGCACCaCaCGU--AGGCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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