miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 1451 0.66 0.873166
Target:  5'- uCGUGCACGugaACGUcgcGGauccguUG-GCGUCCGCGc -3'
miRNA:   3'- -GCACGUGC---UGCA---CC------ACaCGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 6215 0.68 0.808054
Target:  5'- -cUGCAUGugGUGGUGcagcaGCGUguccCCGCGc -3'
miRNA:   3'- gcACGUGCugCACCACa----CGUA----GGCGU- -5'
25661 3' -56 NC_005337.1 + 7291 0.71 0.620786
Target:  5'- uCGUGCugGACGUagcagugcaguGGcGUGUAcCCGCAc -3'
miRNA:   3'- -GCACGugCUGCA-----------CCaCACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 10092 0.66 0.896799
Target:  5'- ----gACGACGUGGUG-GCGuaggaguacucgcucUCCGCGu -3'
miRNA:   3'- gcacgUGCUGCACCACaCGU---------------AGGCGU- -5'
25661 3' -56 NC_005337.1 + 12332 0.67 0.833898
Target:  5'- aGUcCGCGugGUGGUGcagcGCcguccGUCCGCGg -3'
miRNA:   3'- gCAcGUGCugCACCACa---CG-----UAGGCGU- -5'
25661 3' -56 NC_005337.1 + 14812 0.66 0.887386
Target:  5'- uCGUGCgugagcgaggACGcCGUGGUGgGCGUCCu-- -3'
miRNA:   3'- -GCACG----------UGCuGCACCACaCGUAGGcgu -5'
25661 3' -56 NC_005337.1 + 15874 0.71 0.610498
Target:  5'- -aUGCGCGACGUGGUGaUGauCAucgccauccUCCGCGa -3'
miRNA:   3'- gcACGUGCUGCACCAC-AC--GU---------AGGCGU- -5'
25661 3' -56 NC_005337.1 + 28958 0.66 0.887386
Target:  5'- aCGUGCugGGCaacUGGg--GCGUgCGCAg -3'
miRNA:   3'- -GCACGugCUGc--ACCacaCGUAgGCGU- -5'
25661 3' -56 NC_005337.1 + 35436 0.71 0.631084
Target:  5'- aCGcGCACGGCGcGGUGggcGCGaCCGCGa -3'
miRNA:   3'- -GCaCGUGCUGCaCCACa--CGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 35730 0.72 0.549363
Target:  5'- gCGUGgACGGCGUGGUG-GUGUCguaCGCGc -3'
miRNA:   3'- -GCACgUGCUGCACCACaCGUAG---GCGU- -5'
25661 3' -56 NC_005337.1 + 36137 0.66 0.894156
Target:  5'- uCGUGCGCGGCGUgcgGGUccaUGCucaccCCGCu -3'
miRNA:   3'- -GCACGUGCUGCA---CCAc--ACGua---GGCGu -5'
25661 3' -56 NC_005337.1 + 42841 0.66 0.880388
Target:  5'- cCGcUGCGCGugGUGGUGacgGaCGcCUGCGu -3'
miRNA:   3'- -GC-ACGUGCugCACCACa--C-GUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 47821 1.09 0.002709
Target:  5'- uCGUGCACGACGUGGUGUGCAUCCGCAa -3'
miRNA:   3'- -GCACGUGCUGCACCACACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 49454 0.69 0.761871
Target:  5'- gCGUGCGCGAUGcUGGcGuUGCuggCCGCc -3'
miRNA:   3'- -GCACGUGCUGC-ACCaC-ACGua-GGCGu -5'
25661 3' -56 NC_005337.1 + 50002 0.66 0.880388
Target:  5'- gGUGCACGACGgaacGGUGaccaCGUCgaCGCAc -3'
miRNA:   3'- gCACGUGCUGCa---CCACac--GUAG--GCGU- -5'
25661 3' -56 NC_005337.1 + 50238 0.69 0.761871
Target:  5'- uCGUGCGCGccucCGccGGUGUGUcccgCCGCAg -3'
miRNA:   3'- -GCACGUGCu---GCa-CCACACGua--GGCGU- -5'
25661 3' -56 NC_005337.1 + 55169 0.69 0.732691
Target:  5'- uCGUGCgcgucgACGACGUgccGGUGgGCAUgCGCGu -3'
miRNA:   3'- -GCACG------UGCUGCA---CCACaCGUAgGCGU- -5'
25661 3' -56 NC_005337.1 + 56094 0.67 0.858072
Target:  5'- --aGCGCGACGUGGagaagGUGCucgaggCGCAc -3'
miRNA:   3'- gcaCGUGCUGCACCa----CACGuag---GCGU- -5'
25661 3' -56 NC_005337.1 + 57246 0.66 0.887386
Target:  5'- cCGUGCAcCGGCGcUGGUucggGCAcggggCCGCGc -3'
miRNA:   3'- -GCACGU-GCUGC-ACCAca--CGUa----GGCGU- -5'
25661 3' -56 NC_005337.1 + 58893 0.7 0.661947
Target:  5'- aCGUGCACuuCGUGGUG-GCG-CgGCAg -3'
miRNA:   3'- -GCACGUGcuGCACCACaCGUaGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.