miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 50002 0.66 0.880388
Target:  5'- gGUGCACGACGgaacGGUGaccaCGUCgaCGCAc -3'
miRNA:   3'- gCACGUGCUGCa---CCACac--GUAG--GCGU- -5'
25661 3' -56 NC_005337.1 + 86416 0.68 0.790004
Target:  5'- cCG-GCGCGAUGUGGaUG-GCGUCCuCGg -3'
miRNA:   3'- -GCaCGUGCUGCACC-ACaCGUAGGcGU- -5'
25661 3' -56 NC_005337.1 + 61216 0.68 0.816842
Target:  5'- gGUGCACGACgGUGGcGaUGgAcagCCGCAg -3'
miRNA:   3'- gCACGUGCUG-CACCaC-ACgUa--GGCGU- -5'
25661 3' -56 NC_005337.1 + 59183 0.67 0.825459
Target:  5'- cCGUGCgucggggcaccgGCGACGgcUGGaugGUGCAgaaggCCGCGg -3'
miRNA:   3'- -GCACG------------UGCUGC--ACCa--CACGUa----GGCGU- -5'
25661 3' -56 NC_005337.1 + 128104 0.67 0.858072
Target:  5'- aGUGCuaaGCGAacugGUGGUGcGCGgcugCCGCGu -3'
miRNA:   3'- gCACG---UGCUg---CACCACaCGUa---GGCGU- -5'
25661 3' -56 NC_005337.1 + 99469 0.67 0.858072
Target:  5'- gCGUGCGCGAgggcgucuuCGUGGccGUGCGgcgcuaCGCGg -3'
miRNA:   3'- -GCACGUGCU---------GCACCa-CACGUag----GCGU- -5'
25661 3' -56 NC_005337.1 + 77471 0.66 0.873166
Target:  5'- gCGUGCGCGGCGacgcgucccgGGgcgGUGCAUggCgGCGa -3'
miRNA:   3'- -GCACGUGCUGCa---------CCa--CACGUA--GgCGU- -5'
25661 3' -56 NC_005337.1 + 42841 0.66 0.880388
Target:  5'- cCGcUGCGCGugGUGGUGacgGaCGcCUGCGu -3'
miRNA:   3'- -GC-ACGUGCugCACCACa--C-GUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 68499 0.66 0.880388
Target:  5'- gCGcUGCugGCGGcCGUGG-GUGCGcCCGCGc -3'
miRNA:   3'- -GC-ACG--UGCU-GCACCaCACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 117538 0.68 0.780758
Target:  5'- gGUGCAcguCGACGUcgGGUGUGCcgUCGa- -3'
miRNA:   3'- gCACGU---GCUGCA--CCACACGuaGGCgu -5'
25661 3' -56 NC_005337.1 + 49454 0.69 0.761871
Target:  5'- gCGUGCGCGAUGcUGGcGuUGCuggCCGCc -3'
miRNA:   3'- -GCACGUGCUGC-ACCaC-ACGua-GGCGu -5'
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 15874 0.71 0.610498
Target:  5'- -aUGCGCGACGUGGUGaUGauCAucgccauccUCCGCGa -3'
miRNA:   3'- gcACGUGCUGCACCAC-AC--GU---------AGGCGU- -5'
25661 3' -56 NC_005337.1 + 7291 0.71 0.620786
Target:  5'- uCGUGCugGACGUagcagugcaguGGcGUGUAcCCGCAc -3'
miRNA:   3'- -GCACGugCUGCA-----------CCaCACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 71279 0.71 0.641382
Target:  5'- -aUGCGCcGCGUGGcgcugGUGCGcuUCCGCAc -3'
miRNA:   3'- gcACGUGcUGCACCa----CACGU--AGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133954 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134015 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134076 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134137 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.