miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 47821 1.09 0.002709
Target:  5'- uCGUGCACGACGUGGUGUGCAUCCGCAa -3'
miRNA:   3'- -GCACGUGCUGCACCACACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 72426 0.74 0.461819
Target:  5'- aCGaGCACGGCGUGaGcGUGC-UCCGCGa -3'
miRNA:   3'- -GCaCGUGCUGCAC-CaCACGuAGGCGU- -5'
25661 3' -56 NC_005337.1 + 35730 0.72 0.549363
Target:  5'- gCGUGgACGGCGUGGUG-GUGUCguaCGCGc -3'
miRNA:   3'- -GCACgUGCUGCACCACaCGUAG---GCGU- -5'
25661 3' -56 NC_005337.1 + 108127 0.71 0.610498
Target:  5'- aCGcUGguCGGCGUGGUG-GUGUCCGaCAa -3'
miRNA:   3'- -GC-ACguGCUGCACCACaCGUAGGC-GU- -5'
25661 3' -56 NC_005337.1 + 15874 0.71 0.610498
Target:  5'- -aUGCGCGACGUGGUGaUGauCAucgccauccUCCGCGa -3'
miRNA:   3'- gcACGUGCUGCACCAC-AC--GU---------AGGCGU- -5'
25661 3' -56 NC_005337.1 + 7291 0.71 0.620786
Target:  5'- uCGUGCugGACGUagcagugcaguGGcGUGUAcCCGCAc -3'
miRNA:   3'- -GCACGugCUGCA-----------CCaCACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 35436 0.71 0.631084
Target:  5'- aCGcGCACGGCGcGGUGggcGCGaCCGCGa -3'
miRNA:   3'- -GCaCGUGCUGCaCCACa--CGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 84262 0.71 0.641382
Target:  5'- uGUGCGuCGACGUGGUcaccguuccgucGUGCAccaucaccuucUCCGUg -3'
miRNA:   3'- gCACGU-GCUGCACCA------------CACGU-----------AGGCGu -5'
25661 3' -56 NC_005337.1 + 71279 0.71 0.641382
Target:  5'- -aUGCGCcGCGUGGcgcugGUGCGcuUCCGCAc -3'
miRNA:   3'- gcACGUGcUGCACCa----CACGU--AGGCGU- -5'
25661 3' -56 NC_005337.1 + 105167 0.71 0.651673
Target:  5'- gCGcUGCACGGCGUGGUcgaccccUGCuucgcgggGUCCGCGg -3'
miRNA:   3'- -GC-ACGUGCUGCACCAc------ACG--------UAGGCGU- -5'
25661 3' -56 NC_005337.1 + 58893 0.7 0.661947
Target:  5'- aCGUGCACuuCGUGGUG-GCG-CgGCAg -3'
miRNA:   3'- -GCACGUGcuGCACCACaCGUaGgCGU- -5'
25661 3' -56 NC_005337.1 + 92593 0.7 0.661947
Target:  5'- aCGUGCuucgACGACGUGGa---CGUCCGCGc -3'
miRNA:   3'- -GCACG----UGCUGCACCacacGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 117299 0.7 0.702716
Target:  5'- gCGUGCugGAgGUGGac-GCcUCCGCGc -3'
miRNA:   3'- -GCACGugCUgCACCacaCGuAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134137 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134076 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134015 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133954 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.