miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25664 5' -58.3 NC_005337.1 + 130199 0.66 0.807641
Target:  5'- aGCUCAUCCuGGAGUgCGagaCGGagaUCg -3'
miRNA:   3'- cCGAGUAGGuCCUCAaGCg--GCCgg-AG- -5'
25664 5' -58.3 NC_005337.1 + 20626 0.66 0.805002
Target:  5'- --aUCGUCgCcGGAGgccguguccuucuuUUCGUCGGCCUCg -3'
miRNA:   3'- ccgAGUAG-GuCCUC--------------AAGCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 30608 0.66 0.798792
Target:  5'- cGCUCAggCAGGAGaUgGCCugcuuGGCCUg -3'
miRNA:   3'- cCGAGUagGUCCUCaAgCGG-----CCGGAg -5'
25664 5' -58.3 NC_005337.1 + 33807 0.66 0.798792
Target:  5'- cGCUCGUCCAGcGAGaugaguccgUCGCgaagGGCCg- -3'
miRNA:   3'- cCGAGUAGGUC-CUCa--------AGCGg---CCGGag -5'
25664 5' -58.3 NC_005337.1 + 93273 0.66 0.798792
Target:  5'- uGGCgaggCCGGGGGUgCGUCGGCg-- -3'
miRNA:   3'- -CCGaguaGGUCCUCAaGCGGCCGgag -5'
25664 5' -58.3 NC_005337.1 + 91934 0.66 0.798792
Target:  5'- cGGaCUUGUCCAGGAGguaguugaUGCCGaacuGCUUCa -3'
miRNA:   3'- -CC-GAGUAGGUCCUCaa------GCGGC----CGGAG- -5'
25664 5' -58.3 NC_005337.1 + 131427 0.66 0.79521
Target:  5'- cGGCUCcgcggacuccgucUCCGcGGAGgccgCGCuCGGCCUg -3'
miRNA:   3'- -CCGAGu------------AGGU-CCUCaa--GCG-GCCGGAg -5'
25664 5' -58.3 NC_005337.1 + 124909 0.66 0.790701
Target:  5'- uGGCUCgaacgcgcagcgcgcGUCCAGGcgacgcgucaucgcAuGUcccgcgUCGCCGGUCUCg -3'
miRNA:   3'- -CCGAG---------------UAGGUCC--------------U-CA------AGCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 68278 0.66 0.789794
Target:  5'- cGCUCGcCCAcGGGa--CGCaCGGCCUCg -3'
miRNA:   3'- cCGAGUaGGU-CCUcaaGCG-GCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 3842 0.66 0.789794
Target:  5'- cGGCUCga-CAGGAGgaugUCGauggucuggcaCCGGCCg- -3'
miRNA:   3'- -CCGAGuagGUCCUCa---AGC-----------GGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 39831 0.66 0.780657
Target:  5'- uGCUCcgCCgcacggAGGAGUacgUCGaCGGCUUCg -3'
miRNA:   3'- cCGAGuaGG------UCCUCA---AGCgGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 93579 0.66 0.772319
Target:  5'- aGGCgugCAUUCcGGAGgaagagauaccgccgUCGCCGcGCCUa -3'
miRNA:   3'- -CCGa--GUAGGuCCUCa--------------AGCGGC-CGGAg -5'
25664 5' -58.3 NC_005337.1 + 64672 0.66 0.768581
Target:  5'- cGGCUCGUCgAGGGGcUcaguccccuggacgUCGCgGuguGCCUCu -3'
miRNA:   3'- -CCGAGUAGgUCCUC-A--------------AGCGgC---CGGAG- -5'
25664 5' -58.3 NC_005337.1 + 68492 0.67 0.742877
Target:  5'- cGGUgcgCA-CCGGGGGcgcggacagCGCCGGCgUCa -3'
miRNA:   3'- -CCGa--GUaGGUCCUCaa-------GCGGCCGgAG- -5'
25664 5' -58.3 NC_005337.1 + 32347 0.67 0.742877
Target:  5'- aGCUCGUCCAGGAcggUCuccaggaccaGCCGGUgcUUCa -3'
miRNA:   3'- cCGAGUAGGUCCUca-AG----------CGGCCG--GAG- -5'
25664 5' -58.3 NC_005337.1 + 48556 0.67 0.742877
Target:  5'- aGUUCGuagccguguUCCGGGAGcUUCuGCUGGCCg- -3'
miRNA:   3'- cCGAGU---------AGGUCCUC-AAG-CGGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 59058 0.67 0.742877
Target:  5'- uGGCggaCGacUCCGGGuGgcuggCGCUGGUCUCg -3'
miRNA:   3'- -CCGa--GU--AGGUCCuCaa---GCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 42102 0.67 0.739974
Target:  5'- cGCUCGuUCCGGGAGUccaUCgagacgaggacggcGCUGGCC-Cg -3'
miRNA:   3'- cCGAGU-AGGUCCUCA---AG--------------CGGCCGGaG- -5'
25664 5' -58.3 NC_005337.1 + 9953 0.67 0.723376
Target:  5'- cGGCaacggCGUUCAGGA---CGgCGGCCUCu -3'
miRNA:   3'- -CCGa----GUAGGUCCUcaaGCgGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 23533 0.67 0.713505
Target:  5'- aGGCUCAUCCGGGccauGgccaucaugCgGUCGGCCg- -3'
miRNA:   3'- -CCGAGUAGGUCCu---Caa-------G-CGGCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.