miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 22687 0.67 0.936132
Target:  5'- gGACAUgGaccUGAACGGCGCGUUCa--- -3'
miRNA:   3'- gUUGUAgC---ACUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 22845 0.72 0.747511
Target:  5'- aCGACccgcUCGUGcuggaccGCGGCGCGCUCUCgAa -3'
miRNA:   3'- -GUUGu---AGCACu------UGUCGCGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 25824 0.68 0.92548
Target:  5'- aGGCGUaCGaGAAgAGCGCGCUgUUCCGg -3'
miRNA:   3'- gUUGUA-GCaCUUgUCGCGCGA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 30737 0.69 0.880184
Target:  5'- ---aGUCGU--ACAGCGCGCgCUCCu -3'
miRNA:   3'- guugUAGCAcuUGUCGCGCGaGAGGu -5'
25667 3' -52.7 NC_005337.1 + 30837 0.73 0.706641
Target:  5'- -cGCGUCGaGAcCAGCGCGUUCUCg- -3'
miRNA:   3'- guUGUAGCaCUuGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 31083 0.67 0.948892
Target:  5'- aCGAUcgCG-GggUucagcgaggccacgAGCGCGUUCUCCAc -3'
miRNA:   3'- -GUUGuaGCaCuuG--------------UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 31879 0.69 0.894373
Target:  5'- -----cCGUGGGCAcggucuuCGCGCUCUCCAc -3'
miRNA:   3'- guuguaGCACUUGUc------GCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 32103 0.66 0.965495
Target:  5'- -cACGUUGUacauGGCGGCGCGCaUgUCCAg -3'
miRNA:   3'- guUGUAGCAc---UUGUCGCGCG-AgAGGU- -5'
25667 3' -52.7 NC_005337.1 + 36135 0.68 0.9138
Target:  5'- ---uGUCGUGcGCGGCGUGCgggUCCAu -3'
miRNA:   3'- guugUAGCACuUGUCGCGCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 36211 0.66 0.971749
Target:  5'- --uCGUCGUuuuuugcgccGGccGCGGCGCGCUC-CCGg -3'
miRNA:   3'- guuGUAGCA----------CU--UGUCGCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 37371 0.66 0.958326
Target:  5'- -uACAgCGaGGGCAGCGUGUUCUCg- -3'
miRNA:   3'- guUGUaGCaCUUGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 44382 1.09 0.005089
Target:  5'- cCAACAUCGUGAACAGCGCGCUCUCCAu -3'
miRNA:   3'- -GUUGUAGCACUUGUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 47970 0.72 0.737431
Target:  5'- aCGGCuucuUCGUGGACGGgGCGCgCUUCGc -3'
miRNA:   3'- -GUUGu---AGCACUUGUCgCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 48049 0.66 0.958326
Target:  5'- aCGACG-CGcGGAUAGacgcCGUGCUCUCCGu -3'
miRNA:   3'- -GUUGUaGCaCUUGUC----GCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 48854 0.66 0.958326
Target:  5'- gAGCAUCGUcauGGACgAGUGCGCgUCcCCGc -3'
miRNA:   3'- gUUGUAGCA---CUUG-UCGCGCG-AGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 49273 0.74 0.6541
Target:  5'- gGACAUCGUGcAgGGCGUGaUCUCCGc -3'
miRNA:   3'- gUUGUAGCACuUgUCGCGCgAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 50411 0.66 0.958326
Target:  5'- -cGCGUCGgugacgGAGCGGCGgGCgcuUCCGc -3'
miRNA:   3'- guUGUAGCa-----CUUGUCGCgCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 52134 0.68 0.9138
Target:  5'- uGGCcuUCGUGGACGcgugucGCGCGCUCaugcgCCAg -3'
miRNA:   3'- gUUGu-AGCACUUGU------CGCGCGAGa----GGU- -5'
25667 3' -52.7 NC_005337.1 + 52786 0.67 0.936132
Target:  5'- -cGCGUCGUGGuACGcCGCGUaCUCCGu -3'
miRNA:   3'- guUGUAGCACU-UGUcGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 55112 0.72 0.716986
Target:  5'- cCGAgAUCGUGGAggugcccucgucCGGCGUGgUCUCCAu -3'
miRNA:   3'- -GUUgUAGCACUU------------GUCGCGCgAGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.