miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 2069 0.68 0.9138
Target:  5'- aGGCGagCGUGuccGCgAGCGCGCUCgacgCCAg -3'
miRNA:   3'- gUUGUa-GCACu--UG-UCGCGCGAGa---GGU- -5'
25667 3' -52.7 NC_005337.1 + 2564 0.69 0.865046
Target:  5'- ---aGUCGU--ACAGCGCGgaCUCCAu -3'
miRNA:   3'- guugUAGCAcuUGUCGCGCgaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 2923 0.68 0.907576
Target:  5'- gCGGCGUCGccgGAgugccgacgcgcACGGCGCGCaugagcgcggUCUCCGc -3'
miRNA:   3'- -GUUGUAGCa--CU------------UGUCGCGCG----------AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 3291 0.68 0.9011
Target:  5'- gCGGCGUCGUGucgUAGCGCGCguugCgcacgUCCAc -3'
miRNA:   3'- -GUUGUAGCACuu-GUCGCGCGa---G-----AGGU- -5'
25667 3' -52.7 NC_005337.1 + 3939 0.67 0.930401
Target:  5'- gCGGCGUCGagcuGCAGCaGCGCUCguacacgUCCAc -3'
miRNA:   3'- -GUUGUAGCacu-UGUCG-CGCGAG-------AGGU- -5'
25667 3' -52.7 NC_005337.1 + 4496 0.72 0.747511
Target:  5'- cCAGCA-CGUGcAGCGGCGUGUUC-CCGa -3'
miRNA:   3'- -GUUGUaGCAC-UUGUCGCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 4810 0.67 0.941074
Target:  5'- aGGCAggCGUGcAGCGGUGUGCggUCCAc -3'
miRNA:   3'- gUUGUa-GCAC-UUGUCGCGCGagAGGU- -5'
25667 3' -52.7 NC_005337.1 + 5558 0.72 0.747511
Target:  5'- -cACAUCGggGAacGCAGCGCGCUCg-CAg -3'
miRNA:   3'- guUGUAGCa-CU--UGUCGCGCGAGagGU- -5'
25667 3' -52.7 NC_005337.1 + 5941 0.74 0.643497
Target:  5'- cCGGCGUUGgaccGAGCAGuCGCGCUCgcgCCGc -3'
miRNA:   3'- -GUUGUAGCa---CUUGUC-GCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 6285 0.69 0.892307
Target:  5'- gCAGCGUCGUGucggcguuGCAGCGCaccucgcgcauggcGCggaUCUCCGc -3'
miRNA:   3'- -GUUGUAGCACu-------UGUCGCG--------------CG---AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 9355 0.66 0.965495
Target:  5'- -cGCGUCGccUGGACGcgcgcuGCGCGUUCgagCCAg -3'
miRNA:   3'- guUGUAGC--ACUUGU------CGCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 11358 0.69 0.8874
Target:  5'- uCAGCAUCGcGcccuCgAGCGCGCUCgCCAu -3'
miRNA:   3'- -GUUGUAGCaCuu--G-UCGCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 11730 0.66 0.962028
Target:  5'- gCAGCAcCGgcuGCAGCGCGCgUCgCCGc -3'
miRNA:   3'- -GUUGUaGCacuUGUCGCGCG-AGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 14376 0.66 0.965495
Target:  5'- -uAUGUCGUGAcACAGCGUGCcuaugucgCUCUg -3'
miRNA:   3'- guUGUAGCACU-UGUCGCGCGa-------GAGGu -5'
25667 3' -52.7 NC_005337.1 + 14826 0.68 0.9138
Target:  5'- gGACGcCGUGGugGGCGUcCUUUCCGc -3'
miRNA:   3'- gUUGUaGCACUugUCGCGcGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 15266 0.66 0.954383
Target:  5'- gAACGUUGUG-GCGaCGCGC-CUCCGc -3'
miRNA:   3'- gUUGUAGCACuUGUcGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 15716 0.66 0.962028
Target:  5'- gGACGUCGUGcg-AGCGCGCgaggUCCc -3'
miRNA:   3'- gUUGUAGCACuugUCGCGCGag--AGGu -5'
25667 3' -52.7 NC_005337.1 + 16157 0.75 0.559046
Target:  5'- -cGCAUCGUGAugugaaucgcgGCAGCGgGCccgCUCCAu -3'
miRNA:   3'- guUGUAGCACU-----------UGUCGCgCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 19561 0.71 0.786639
Target:  5'- gGACGUCGUaaacggcgguGAGCcGCGCGaggaUCUCCAc -3'
miRNA:   3'- gUUGUAGCA----------CUUGuCGCGCg---AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 21818 0.72 0.727253
Target:  5'- gCAGCucuUCGUGc---GCGCGCUCUCCc -3'
miRNA:   3'- -GUUGu--AGCACuuguCGCGCGAGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.