miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 2923 0.68 0.907576
Target:  5'- gCGGCGUCGccgGAgugccgacgcgcACGGCGCGCaugagcgcggUCUCCGc -3'
miRNA:   3'- -GUUGUAGCa--CU------------UGUCGCGCG----------AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 103357 0.7 0.840665
Target:  5'- gGugGUCGaGAACGGCGUGCUCg--- -3'
miRNA:   3'- gUugUAGCaCUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 2564 0.69 0.865046
Target:  5'- ---aGUCGU--ACAGCGCGgaCUCCAu -3'
miRNA:   3'- guugUAGCAcuUGUCGCGCgaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 66766 0.69 0.8874
Target:  5'- -cGCAcgCGcGGGCcgcugGGCGUGCUCUCCAa -3'
miRNA:   3'- guUGUa-GCaCUUG-----UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 100661 0.69 0.8874
Target:  5'- -cACAUCGUGAACcacGcCGCGUUCgcgCCGc -3'
miRNA:   3'- guUGUAGCACUUGu--C-GCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 6285 0.69 0.892307
Target:  5'- gCAGCGUCGUGucggcguuGCAGCGCaccucgcgcauggcGCggaUCUCCGc -3'
miRNA:   3'- -GUUGUAGCACu-------UGUCGCG--------------CG---AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 110255 0.69 0.894373
Target:  5'- gAGCcgCGUGAGCauguguaugAGCGCGgUCUCg- -3'
miRNA:   3'- gUUGuaGCACUUG---------UCGCGCgAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 80829 0.69 0.894373
Target:  5'- gAugGUCuUGAG-GGCGUGCUCUCCu -3'
miRNA:   3'- gUugUAGcACUUgUCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 3291 0.68 0.9011
Target:  5'- gCGGCGUCGUGucgUAGCGCGCguugCgcacgUCCAc -3'
miRNA:   3'- -GUUGUAGCACuu-GUCGCGCGa---G-----AGGU- -5'
25667 3' -52.7 NC_005337.1 + 131402 0.7 0.82338
Target:  5'- cCGugAUCGUGuucccGCuGGCGCGCggCUCCGc -3'
miRNA:   3'- -GUugUAGCACu----UG-UCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 58556 0.71 0.786639
Target:  5'- gCAGCGggaUGUGGuacACGGCGaUGCUCUCCGg -3'
miRNA:   3'- -GUUGUa--GCACU---UGUCGC-GCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 19561 0.71 0.786639
Target:  5'- gGACGUCGUaaacggcgguGAGCcGCGCGaggaUCUCCAc -3'
miRNA:   3'- gUUGUAGCA----------CUUGuCGCGCg---AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 16157 0.75 0.559046
Target:  5'- -cGCAUCGUGAugugaaucgcgGCAGCGgGCccgCUCCAu -3'
miRNA:   3'- guUGUAGCACU-----------UGUCGCgCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 56438 0.74 0.622271
Target:  5'- gCAGCAgcgCGUGGACGGCGCGgUggCCGa -3'
miRNA:   3'- -GUUGUa--GCACUUGUCGCGCgAgaGGU- -5'
25667 3' -52.7 NC_005337.1 + 117357 0.73 0.664684
Target:  5'- uCGGCcgCGUGGAC-GUGCGCacgCUCCAg -3'
miRNA:   3'- -GUUGuaGCACUUGuCGCGCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 30837 0.73 0.706641
Target:  5'- -cGCGUCGaGAcCAGCGCGUUCUCg- -3'
miRNA:   3'- guUGUAGCaCUuGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 66139 0.72 0.716986
Target:  5'- aAGCG-CGUGGACGGUcCGUUCUCCGc -3'
miRNA:   3'- gUUGUaGCACUUGUCGcGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 21818 0.72 0.727253
Target:  5'- gCAGCucuUCGUGc---GCGCGCUCUCCc -3'
miRNA:   3'- -GUUGu--AGCACuuguCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 5558 0.72 0.747511
Target:  5'- -cACAUCGggGAacGCAGCGCGCUCg-CAg -3'
miRNA:   3'- guUGUAGCa-CU--UGUCGCGCGAGagGU- -5'
25667 3' -52.7 NC_005337.1 + 22845 0.72 0.747511
Target:  5'- aCGACccgcUCGUGcuggaccGCGGCGCGCUCUCgAa -3'
miRNA:   3'- -GUUGu---AGCACu------UGUCGCGCGAGAGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.