miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 44382 1.09 0.005089
Target:  5'- cCAACAUCGUGAACAGCGCGCUCUCCAu -3'
miRNA:   3'- -GUUGUAGCACUUGUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 104971 0.81 0.284488
Target:  5'- cCGGCA-CGUGAGCGGCGUgaugacccuGCUCUCCAa -3'
miRNA:   3'- -GUUGUaGCACUUGUCGCG---------CGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 110080 0.79 0.36859
Target:  5'- -cGCGUCuGUGAGgCAGUGCGUUCUCCGu -3'
miRNA:   3'- guUGUAG-CACUU-GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 101433 0.77 0.439643
Target:  5'- gAACAUCGUG-GCGGUGCGCUCcaCCGa -3'
miRNA:   3'- gUUGUAGCACuUGUCGCGCGAGa-GGU- -5'
25667 3' -52.7 NC_005337.1 + 68670 0.77 0.458595
Target:  5'- gAGCG-CGUGcAGCAGCGCGCUCUUg- -3'
miRNA:   3'- gUUGUaGCAC-UUGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 16157 0.75 0.559046
Target:  5'- -cGCAUCGUGAugugaaucgcgGCAGCGgGCccgCUCCAu -3'
miRNA:   3'- guUGUAGCACU-----------UGUCGCgCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 108441 0.75 0.559046
Target:  5'- gGGCuucCG-GAACAGCGCGCUCUUCu -3'
miRNA:   3'- gUUGua-GCaCUUGUCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 56438 0.74 0.622271
Target:  5'- gCAGCAgcgCGUGGACGGCGCGgUggCCGa -3'
miRNA:   3'- -GUUGUa--GCACUUGUCGCGCgAgaGGU- -5'
25667 3' -52.7 NC_005337.1 + 5941 0.74 0.643497
Target:  5'- cCGGCGUUGgaccGAGCAGuCGCGCUCgcgCCGc -3'
miRNA:   3'- -GUUGUAGCa---CUUGUC-GCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 49273 0.74 0.6541
Target:  5'- gGACAUCGUGcAgGGCGUGaUCUCCGc -3'
miRNA:   3'- gUUGUAGCACuUgUCGCGCgAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 117357 0.73 0.664684
Target:  5'- uCGGCcgCGUGGAC-GUGCGCacgCUCCAg -3'
miRNA:   3'- -GUUGuaGCACUUGuCGCGCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 88328 0.73 0.685758
Target:  5'- -----cCGUGcgcucCGGCGCGCUCUCCAg -3'
miRNA:   3'- guuguaGCACuu---GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 30837 0.73 0.706641
Target:  5'- -cGCGUCGaGAcCAGCGCGUUCUCg- -3'
miRNA:   3'- guUGUAGCaCUuGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 55112 0.72 0.716986
Target:  5'- cCGAgAUCGUGGAggugcccucgucCGGCGUGgUCUCCAu -3'
miRNA:   3'- -GUUgUAGCACUU------------GUCGCGCgAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 66139 0.72 0.716986
Target:  5'- aAGCG-CGUGGACGGUcCGUUCUCCGc -3'
miRNA:   3'- gUUGUaGCACUUGUCGcGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 21818 0.72 0.727253
Target:  5'- gCAGCucuUCGUGc---GCGCGCUCUCCc -3'
miRNA:   3'- -GUUGu--AGCACuuguCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 47970 0.72 0.737431
Target:  5'- aCGGCuucuUCGUGGACGGgGCGCgCUUCGc -3'
miRNA:   3'- -GUUGu---AGCACUUGUCgCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 22845 0.72 0.747511
Target:  5'- aCGACccgcUCGUGcuggaccGCGGCGCGCUCUCgAa -3'
miRNA:   3'- -GUUGu---AGCACu------UGUCGCGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 5558 0.72 0.747511
Target:  5'- -cACAUCGggGAacGCAGCGCGCUCg-CAg -3'
miRNA:   3'- guUGUAGCa-CU--UGUCGCGCGAGagGU- -5'
25667 3' -52.7 NC_005337.1 + 4496 0.72 0.747511
Target:  5'- cCAGCA-CGUGcAGCGGCGUGUUC-CCGa -3'
miRNA:   3'- -GUUGUaGCAC-UUGUCGCGCGAGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.