miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 48637 0.69 0.666787
Target:  5'- gCUCGGcGGAcgccagcgcGCAGCUgGAcGCCGUGAu -3'
miRNA:   3'- -GAGCCuCUU---------CGUCGAgCUcCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 52361 0.73 0.447896
Target:  5'- -cCGGGGAcggGGCcgcugacGGCUgCGGGGCCGUGGa -3'
miRNA:   3'- gaGCCUCU---UCG-------UCGA-GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 56102 0.75 0.358189
Target:  5'- -gUGGAGAAGguGCUCGAGGCgcacggcaucgccagCGUGc -3'
miRNA:   3'- gaGCCUCUUCguCGAGCUCCG---------------GCACu -5'
25667 5' -57.3 NC_005337.1 + 57263 0.66 0.836978
Target:  5'- uUCGGGcacGggGCcGCgCGGGGCCGg-- -3'
miRNA:   3'- gAGCCU---CuuCGuCGaGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 60271 0.66 0.814967
Target:  5'- gUCGGGGcAGGCgcgggggugggagugGGCUUGGGGUCGUc- -3'
miRNA:   3'- gAGCCUC-UUCG---------------UCGAGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 68644 0.68 0.746683
Target:  5'- -gCGGAGggGCGGauCUUGGGGUgGuUGAg -3'
miRNA:   3'- gaGCCUCuuCGUC--GAGCUCCGgC-ACU- -5'
25667 5' -57.3 NC_005337.1 + 73480 0.67 0.79365
Target:  5'- -gCGGAGGAccccaAGCUCGucgcGGUCGUGAa -3'
miRNA:   3'- gaGCCUCUUcg---UCGAGCu---CCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 74175 0.69 0.676966
Target:  5'- -gCGG-GAGGCGcGCUCG-GGCCGgGAg -3'
miRNA:   3'- gaGCCuCUUCGU-CGAGCuCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 74569 0.69 0.650447
Target:  5'- -aCGGAGAuuuccaugcucgaaaAGCGGCUCGggcucucccGGGUCGUGc -3'
miRNA:   3'- gaGCCUCU---------------UCGUCGAGC---------UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 74660 0.67 0.765836
Target:  5'- --aGGugaAGAAGCGGCUCGgcaacgcgaaGGGCCuGUGGc -3'
miRNA:   3'- gagCC---UCUUCGUCGAGC----------UCCGG-CACU- -5'
25667 5' -57.3 NC_005337.1 + 75784 0.7 0.61564
Target:  5'- gCUCGuuaagcugcuGGAGCGGCUgGAGGCCGaGAa -3'
miRNA:   3'- -GAGCcu--------CUUCGUCGAgCUCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 76824 0.72 0.467291
Target:  5'- uCUCGGAG-GGCAuGCUCGcgguGGCCG-GAg -3'
miRNA:   3'- -GAGCCUCuUCGU-CGAGCu---CCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 81318 0.66 0.836978
Target:  5'- -gCGGAGAacGGCGGCgCGAagGGCUG-GAg -3'
miRNA:   3'- gaGCCUCU--UCGUCGaGCU--CCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 82261 0.78 0.244911
Target:  5'- -aUGGAGAgcGGCGcGUUCGAGGUCGUGAg -3'
miRNA:   3'- gaGCCUCU--UCGU-CGAGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 83259 0.72 0.476678
Target:  5'- -cCGGAGccugacuGGCGGCUCGAgGGCCGg-- -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCU-CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 88289 0.66 0.836978
Target:  5'- gUCGGuGGAGGCggacaucaAGCUCGGGGacgucagCGUGGa -3'
miRNA:   3'- gAGCC-UCUUCG--------UCGAGCUCCg------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 89977 0.69 0.665768
Target:  5'- gCUCGGGGGAGCGGCgccguaaaugcccUCGucGCCGc-- -3'
miRNA:   3'- -GAGCCUCUUCGUCG-------------AGCucCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 94458 0.67 0.784512
Target:  5'- -gCGGcGGAGCAGCUCcGGGUCGc-- -3'
miRNA:   3'- gaGCCuCUUCGUCGAGcUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 96435 0.69 0.676966
Target:  5'- -cUGGAGAaccucaagcgcaAGUucAGCUuccgCGAGGCCGUGAc -3'
miRNA:   3'- gaGCCUCU------------UCG--UCGA----GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 98982 0.68 0.707245
Target:  5'- -gCGcGAuGAAGU-GCaUCGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CU-CUUCGuCG-AGCUCCGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.