Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 5' | -57.3 | NC_005337.1 | + | 1045 | 0.69 | 0.656581 |
Target: 5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3' miRNA: 3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 1045 | 0.69 | 0.656581 |
Target: 5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3' miRNA: 3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 2249 | 0.69 | 0.666787 |
Target: 5'- cCUUGGAGAGGaa-CUCGcggaAGGCCGUGu -3' miRNA: 3'- -GAGCCUCUUCgucGAGC----UCCGGCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 2402 | 0.68 | 0.734014 |
Target: 5'- cCUCcaGGAGGCAGCggacgaccucggggUCGGGGCCGUc- -3' miRNA: 3'- -GAGccUCUUCGUCG--------------AGCUCCGGCAcu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 4901 | 0.66 | 0.811478 |
Target: 5'- gCUCGGAGAacgGGCGGUggaCGAcGGCCu--- -3' miRNA: 3'- -GAGCCUCU---UCGUCGa--GCU-CCGGcacu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 9247 | 0.66 | 0.817567 |
Target: 5'- uUCcccGAGAAGUGGCUguccacgcgcucuaUGAGGCUGUGGa -3' miRNA: 3'- gAGc--CUCUUCGUCGA--------------GCUCCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 10765 | 0.72 | 0.467291 |
Target: 5'- aCUCGGGGAuGUAGCaggCGGGGUCGUc- -3' miRNA: 3'- -GAGCCUCUuCGUCGa--GCUCCGGCAcu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 12629 | 0.66 | 0.836978 |
Target: 5'- cCUCGGGGGucGCcGCgucgUCGAuGCCGUGGg -3' miRNA: 3'- -GAGCCUCUu-CGuCG----AGCUcCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 15993 | 0.68 | 0.697204 |
Target: 5'- -cCGGAGucGCAGCUgCGAGaCCGUa- -3' miRNA: 3'- gaGCCUCuuCGUCGA-GCUCcGGCAcu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 18693 | 0.76 | 0.310019 |
Target: 5'- gUCGGAGAcAGCAGCUCG-GGCCc--- -3' miRNA: 3'- gAGCCUCU-UCGUCGAGCuCCGGcacu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 19609 | 0.79 | 0.196406 |
Target: 5'- -gCGGAGAGGCGGcCUCGAGGCCc--- -3' miRNA: 3'- gaGCCUCUUCGUC-GAGCUCCGGcacu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 22353 | 0.68 | 0.727129 |
Target: 5'- aCUCGGAGGugaAGCa-GGGGCgCGUGAa -3' miRNA: 3'- -GAGCCUCUucgUCGagCUCCG-GCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 23070 | 0.67 | 0.756314 |
Target: 5'- gCUCGu--GGGCGGCUCGGGGuCCGgGAa -3' miRNA: 3'- -GAGCcucUUCGUCGAGCUCC-GGCaCU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 30325 | 0.67 | 0.784512 |
Target: 5'- -gCGGAGGAGCGcacgcGCUCGcGGuuGuUGAa -3' miRNA: 3'- gaGCCUCUUCGU-----CGAGCuCCggC-ACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 30561 | 0.67 | 0.784512 |
Target: 5'- aCUCGG-GGAGCuccccGUg-GAGGCCGUGc -3' miRNA: 3'- -GAGCCuCUUCGu----CGagCUCCGGCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 32944 | 0.67 | 0.784512 |
Target: 5'- gCUCGGAGGcuaGGCGGUg-GAGGuuGUa- -3' miRNA: 3'- -GAGCCUCU---UCGUCGagCUCCggCAcu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 33384 | 0.66 | 0.836978 |
Target: 5'- gUCGGAgcgccgccccgcGAAGUAGCUCuGGcggccGCCGUGGa -3' miRNA: 3'- gAGCCU------------CUUCGUCGAGcUC-----CGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 44223 | 0.68 | 0.717223 |
Target: 5'- -gCGGAGcGGGCgAGCgcCGAGGCCGUc- -3' miRNA: 3'- gaGCCUC-UUCG-UCGa-GCUCCGGCAcu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 44421 | 1.09 | 0.001923 |
Target: 5'- gCUCGGAGAAGCAGCUCGAGGCCGUGAa -3' miRNA: 3'- -GAGCCUCUUCGUCGAGCUCCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 48541 | 0.68 | 0.717223 |
Target: 5'- --aGGAGGAGCGGCggGAGuucguaGCCGUGu -3' miRNA: 3'- gagCCUCUUCGUCGagCUC------CGGCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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