miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 44421 1.09 0.001923
Target:  5'- gCUCGGAGAAGCAGCUCGAGGCCGUGAa -3'
miRNA:   3'- -GAGCCUCUUCGUCGAGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 19609 0.79 0.196406
Target:  5'- -gCGGAGAGGCGGcCUCGAGGCCc--- -3'
miRNA:   3'- gaGCCUCUUCGUC-GAGCUCCGGcacu -5'
25667 5' -57.3 NC_005337.1 + 82261 0.78 0.244911
Target:  5'- -aUGGAGAgcGGCGcGUUCGAGGUCGUGAg -3'
miRNA:   3'- gaGCCUCU--UCGU-CGAGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 18693 0.76 0.310019
Target:  5'- gUCGGAGAcAGCAGCUCG-GGCCc--- -3'
miRNA:   3'- gAGCCUCU-UCGUCGAGCuCCGGcacu -5'
25667 5' -57.3 NC_005337.1 + 56102 0.75 0.358189
Target:  5'- -gUGGAGAAGguGCUCGAGGCgcacggcaucgccagCGUGc -3'
miRNA:   3'- gaGCCUCUUCguCGAGCUCCG---------------GCACu -5'
25667 5' -57.3 NC_005337.1 + 127447 0.73 0.413102
Target:  5'- uCUCGGAGGAugagguccgccGCcuGCUCGGGGCCGg-- -3'
miRNA:   3'- -GAGCCUCUU-----------CGu-CGAGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 52361 0.73 0.447896
Target:  5'- -cCGGGGAcggGGCcgcugacGGCUgCGGGGCCGUGGa -3'
miRNA:   3'- gaGCCUCU---UCG-------UCGA-GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 10765 0.72 0.467291
Target:  5'- aCUCGGGGAuGUAGCaggCGGGGUCGUc- -3'
miRNA:   3'- -GAGCCUCUuCGUCGa--GCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 76824 0.72 0.467291
Target:  5'- uCUCGGAG-GGCAuGCUCGcgguGGCCG-GAg -3'
miRNA:   3'- -GAGCCUCuUCGU-CGAGCu---CCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 83259 0.72 0.476678
Target:  5'- -cCGGAGccugacuGGCGGCUCGAgGGCCGg-- -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCU-CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 75784 0.7 0.61564
Target:  5'- gCUCGuuaagcugcuGGAGCGGCUgGAGGCCGaGAa -3'
miRNA:   3'- -GAGCcu--------CUUCGUCGAgCUCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 101508 0.7 0.61564
Target:  5'- -gCGcGAGcgcuccgcGCGGCUgGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CUCuu------CGUCGAgCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 112391 0.69 0.636117
Target:  5'- -cUGGAGGAGC-GCcgCGcAGGCCGUGc -3'
miRNA:   3'- gaGCCUCUUCGuCGa-GC-UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 74569 0.69 0.650447
Target:  5'- -aCGGAGAuuuccaugcucgaaaAGCGGCUCGggcucucccGGGUCGUGc -3'
miRNA:   3'- gaGCCUCU---------------UCGUCGAGC---------UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 1045 0.69 0.656581
Target:  5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3'
miRNA:   3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 1045 0.69 0.656581
Target:  5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3'
miRNA:   3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 89977 0.69 0.665768
Target:  5'- gCUCGGGGGAGCGGCgccguaaaugcccUCGucGCCGc-- -3'
miRNA:   3'- -GAGCCUCUUCGUCG-------------AGCucCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 2249 0.69 0.666787
Target:  5'- cCUUGGAGAGGaa-CUCGcggaAGGCCGUGu -3'
miRNA:   3'- -GAGCCUCUUCgucGAGC----UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 48637 0.69 0.666787
Target:  5'- gCUCGGcGGAcgccagcgcGCAGCUgGAcGCCGUGAu -3'
miRNA:   3'- -GAGCCuCUU---------CGUCGAgCUcCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 74175 0.69 0.676966
Target:  5'- -gCGG-GAGGCGcGCUCG-GGCCGgGAg -3'
miRNA:   3'- gaGCCuCUUCGU-CGAGCuCCGGCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.