miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 9247 0.66 0.817567
Target:  5'- uUCcccGAGAAGUGGCUguccacgcgcucuaUGAGGCUGUGGa -3'
miRNA:   3'- gAGc--CUCUUCGUCGA--------------GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 44223 0.68 0.717223
Target:  5'- -gCGGAGcGGGCgAGCgcCGAGGCCGUc- -3'
miRNA:   3'- gaGCCUC-UUCG-UCGa-GCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 22353 0.68 0.727129
Target:  5'- aCUCGGAGGugaAGCa-GGGGCgCGUGAa -3'
miRNA:   3'- -GAGCCUCUucgUCGagCUCCG-GCACU- -5'
25667 5' -57.3 NC_005337.1 + 2402 0.68 0.734014
Target:  5'- cCUCcaGGAGGCAGCggacgaccucggggUCGGGGCCGUc- -3'
miRNA:   3'- -GAGccUCUUCGUCG--------------AGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 129614 0.67 0.775238
Target:  5'- -gUGGAGcucguccGGCGGCUCGuGGCCGccgGGu -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCuCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 30561 0.67 0.784512
Target:  5'- aCUCGG-GGAGCuccccGUg-GAGGCCGUGc -3'
miRNA:   3'- -GAGCCuCUUCGu----CGagCUCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 32944 0.67 0.784512
Target:  5'- gCUCGGAGGcuaGGCGGUg-GAGGuuGUa- -3'
miRNA:   3'- -GAGCCUCU---UCGUCGagCUCCggCAcu -5'
25667 5' -57.3 NC_005337.1 + 73480 0.67 0.79365
Target:  5'- -gCGGAGGAccccaAGCUCGucgcGGUCGUGAa -3'
miRNA:   3'- gaGCCUCUUcg---UCGAGCu---CCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 60271 0.66 0.814967
Target:  5'- gUCGGGGcAGGCgcgggggugggagugGGCUUGGGGUCGUc- -3'
miRNA:   3'- gAGCCUC-UUCG---------------UCGAGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 15993 0.68 0.697204
Target:  5'- -cCGGAGucGCAGCUgCGAGaCCGUa- -3'
miRNA:   3'- gaGCCUCuuCGUCGA-GCUCcGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 74175 0.69 0.676966
Target:  5'- -gCGG-GAGGCGcGCUCG-GGCCGgGAg -3'
miRNA:   3'- gaGCCuCUUCGU-CGAGCuCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 2249 0.69 0.666787
Target:  5'- cCUUGGAGAGGaa-CUCGcggaAGGCCGUGu -3'
miRNA:   3'- -GAGCCUCUUCgucGAGC----UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 82261 0.78 0.244911
Target:  5'- -aUGGAGAgcGGCGcGUUCGAGGUCGUGAg -3'
miRNA:   3'- gaGCCUCU--UCGU-CGAGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 127447 0.73 0.413102
Target:  5'- uCUCGGAGGAugagguccgccGCcuGCUCGGGGCCGg-- -3'
miRNA:   3'- -GAGCCUCUU-----------CGu-CGAGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 10765 0.72 0.467291
Target:  5'- aCUCGGGGAuGUAGCaggCGGGGUCGUc- -3'
miRNA:   3'- -GAGCCUCUuCGUCGa--GCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 76824 0.72 0.467291
Target:  5'- uCUCGGAG-GGCAuGCUCGcgguGGCCG-GAg -3'
miRNA:   3'- -GAGCCUCuUCGU-CGAGCu---CCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 83259 0.72 0.476678
Target:  5'- -cCGGAGccugacuGGCGGCUCGAgGGCCGg-- -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCU-CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 101508 0.7 0.61564
Target:  5'- -gCGcGAGcgcuccgcGCGGCUgGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CUCuu------CGUCGAgCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 1045 0.69 0.656581
Target:  5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3'
miRNA:   3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 48637 0.69 0.666787
Target:  5'- gCUCGGcGGAcgccagcgcGCAGCUgGAcGCCGUGAu -3'
miRNA:   3'- -GAGCCuCUU---------CGUCGAgCUcCGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.