miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 41386 0.7 0.701254
Target:  5'- gCCGgcaacCGCGCGCGGGCagaugacguccggcgUCCgcgGGAGCg -3'
miRNA:   3'- -GGCaa---GUGCGCGCUCG---------------AGGa--CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 42083 0.69 0.794352
Target:  5'- aCCGUgcgccacggUCACGCGCucGUUCCgGGAGUc -3'
miRNA:   3'- -GGCA---------AGUGCGCGcuCGAGGaCUUCGa -5'
25675 3' -55.4 NC_005337.1 + 42486 1.1 0.00249
Target:  5'- cCCGUUCACGCGCGAGCUCCUGAAGCUg -3'
miRNA:   3'- -GGCAAGUGCGCGCUCGAGGACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 42493 0.69 0.775816
Target:  5'- gCCGUggaGCGCGCGGaacuGCUCCcGGAGaCg -3'
miRNA:   3'- -GGCAag-UGCGCGCU----CGAGGaCUUC-Ga -5'
25675 3' -55.4 NC_005337.1 + 42540 0.67 0.876782
Target:  5'- gCCGgaCGCGCuGCGGGCg-CUGGugcGGCUg -3'
miRNA:   3'- -GGCaaGUGCG-CGCUCGagGACU---UCGA- -5'
25675 3' -55.4 NC_005337.1 + 46462 0.66 0.890808
Target:  5'- gCGcggCGCGCcgGCGAGCUCCcgGGcAGCa -3'
miRNA:   3'- gGCaa-GUGCG--CGCUCGAGGa-CU-UCGa -5'
25675 3' -55.4 NC_005337.1 + 47879 0.68 0.821017
Target:  5'- gCCGgaCGCGCGC-AGCcgCCUGGcGGCa -3'
miRNA:   3'- -GGCaaGUGCGCGcUCGa-GGACU-UCGa -5'
25675 3' -55.4 NC_005337.1 + 47961 0.68 0.829568
Target:  5'- aUGUUCGCGCGCGAGUgcggCgCgGAcGCg -3'
miRNA:   3'- gGCAAGUGCGCGCUCGa---G-GaCUuCGa -5'
25675 3' -55.4 NC_005337.1 + 48163 0.68 0.829568
Target:  5'- gCCGgacuccUCGCGCGCGGaggcGCUgCUGcggGAGCUg -3'
miRNA:   3'- -GGCa-----AGUGCGCGCU----CGAgGAC---UUCGA- -5'
25675 3' -55.4 NC_005337.1 + 51878 0.67 0.861869
Target:  5'- cUCGUUCGuCGCG-GGGCUCCcgacgacGAGGCc -3'
miRNA:   3'- -GGCAAGU-GCGCgCUCGAGGa------CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 52023 0.7 0.74608
Target:  5'- gCCGcgCGCGCGCggucaugGAGUUCCgggaccugcgGGAGCUg -3'
miRNA:   3'- -GGCaaGUGCGCG-------CUCGAGGa---------CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 52985 0.75 0.437886
Target:  5'- aCCGcgagaUCAgGCGCGuGCUCCUGuAGCg -3'
miRNA:   3'- -GGCa----AGUgCGCGCuCGAGGACuUCGa -5'
25675 3' -55.4 NC_005337.1 + 54537 0.7 0.737252
Target:  5'- gCCG--CACGUGCGGGCUCacggagaUGGAGUg -3'
miRNA:   3'- -GGCaaGUGCGCGCUCGAGg------ACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 57078 0.72 0.629439
Target:  5'- gCGUgcggaUCACGCGCGAGacggcgacgcugaucUUCCgGAAGCUg -3'
miRNA:   3'- gGCA-----AGUGCGCGCUC---------------GAGGaCUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 58658 0.66 0.921774
Target:  5'- gCGggaCACGCGCGccaAGCUCgUGGAcGCc -3'
miRNA:   3'- gGCaa-GUGCGCGC---UCGAGgACUU-CGa -5'
25675 3' -55.4 NC_005337.1 + 59655 0.66 0.91606
Target:  5'- gCCGgggaacaUCACGUcgucGCG-GCUCCggGAGGCg -3'
miRNA:   3'- -GGCa------AGUGCG----CGCuCGAGGa-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 60474 0.68 0.837936
Target:  5'- gCGgaagUCGaGCGUGAGCUCgUGcGGCUg -3'
miRNA:   3'- gGCa---AGUgCGCGCUCGAGgACuUCGA- -5'
25675 3' -55.4 NC_005337.1 + 64834 0.69 0.794352
Target:  5'- aUGUgCGCGCGCGAGCUggcgCCgGAcgAGCg -3'
miRNA:   3'- gGCAaGUGCGCGCUCGA----GGaCU--UCGa -5'
25675 3' -55.4 NC_005337.1 + 65951 0.68 0.803401
Target:  5'- aCGggCACGCGCGuGCcgcccUCCUcGGGCa -3'
miRNA:   3'- gGCaaGUGCGCGCuCG-----AGGAcUUCGa -5'
25675 3' -55.4 NC_005337.1 + 66329 0.66 0.910105
Target:  5'- gCGggCugGCGacaCGuGCUCgUGGAGCg -3'
miRNA:   3'- gGCaaGugCGC---GCuCGAGgACUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.