miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 822 0.71 0.656256
Target:  5'- gCCGUccgCGCGCGCGGGC-CCg--GGCUc -3'
miRNA:   3'- -GGCAa--GUGCGCGCUCGaGGacuUCGA- -5'
25675 3' -55.4 NC_005337.1 + 822 0.71 0.656256
Target:  5'- gCCGUccgCGCGCGCGGGC-CCg--GGCUc -3'
miRNA:   3'- -GGCAa--GUGCGCGCUCGaGGacuUCGA- -5'
25675 3' -55.4 NC_005337.1 + 1128 0.76 0.411131
Target:  5'- gCCGcagCACGCGCGcgaccAGCUCCgcggGGAGCg -3'
miRNA:   3'- -GGCaa-GUGCGCGC-----UCGAGGa---CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 1128 0.68 0.821017
Target:  5'- gCCGcagCACGCGCGcgaccAGCUCCgcgggGAucacAGCUc -3'
miRNA:   3'- -GGCaa-GUGCGCGC-----UCGAGGa----CU----UCGA- -5'
25675 3' -55.4 NC_005337.1 + 2614 0.76 0.393867
Target:  5'- gUCGUUCagcgcgGCGCGCacGGGCUCCUcGAAGCg -3'
miRNA:   3'- -GGCAAG------UGCGCG--CUCGAGGA-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 9664 0.66 0.890808
Target:  5'- ----cCGCGCGUGAGCUCgguaacgaaaUGggGCUu -3'
miRNA:   3'- ggcaaGUGCGCGCUCGAGg---------ACuuCGA- -5'
25675 3' -55.4 NC_005337.1 + 9718 0.66 0.890808
Target:  5'- gCGgccUCGCGCaGCGGGgaggagagCCUGAAGCa -3'
miRNA:   3'- gGCa--AGUGCG-CGCUCga------GGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 10310 0.66 0.903909
Target:  5'- gCCGUUCGCgucuaugugcaGCGCGAccgGCUCgC-GggGCg -3'
miRNA:   3'- -GGCAAGUG-----------CGCGCU---CGAG-GaCuuCGa -5'
25675 3' -55.4 NC_005337.1 + 10635 0.67 0.876782
Target:  5'- aCCG-UCGCGcCGCugcaGAGCUCCacGAGCg -3'
miRNA:   3'- -GGCaAGUGC-GCG----CUCGAGGacUUCGa -5'
25675 3' -55.4 NC_005337.1 + 11415 0.67 0.883909
Target:  5'- -gGUUCcgcagGCGCGCGGGCUCUcc-AGCa -3'
miRNA:   3'- ggCAAG-----UGCGCGCUCGAGGacuUCGa -5'
25675 3' -55.4 NC_005337.1 + 13062 0.66 0.890808
Target:  5'- uCCGUgucgCugcuGCGCGCGGGCgcg-GAAGCg -3'
miRNA:   3'- -GGCAa---G----UGCGCGCUCGaggaCUUCGa -5'
25675 3' -55.4 NC_005337.1 + 18138 0.67 0.883909
Target:  5'- cUCGUUCggcccccagGCGCGC-AGCUCCacGAGCUc -3'
miRNA:   3'- -GGCAAG---------UGCGCGcUCGAGGacUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 23763 0.71 0.656256
Target:  5'- gCCGUguucacCACGCGCGAGCgCCacgucGAGCUg -3'
miRNA:   3'- -GGCAa-----GUGCGCGCUCGaGGac---UUCGA- -5'
25675 3' -55.4 NC_005337.1 + 28449 0.74 0.494222
Target:  5'- uCC-UUCACGaCGauguacuuguCGAGCUCCUGGAGCa -3'
miRNA:   3'- -GGcAAGUGC-GC----------GCUCGAGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 28950 0.68 0.803401
Target:  5'- gCCGccgCACGUGCuGGGCaaCUGggGCg -3'
miRNA:   3'- -GGCaa-GUGCGCG-CUCGagGACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 30247 0.68 0.837936
Target:  5'- aCGUUC-CGCGCGAuggcgucgcccuGCUCCagGAAgGCg -3'
miRNA:   3'- gGCAAGuGCGCGCU------------CGAGGa-CUU-CGa -5'
25675 3' -55.4 NC_005337.1 + 30383 0.66 0.897476
Target:  5'- aCGUccaugUCGCGCGCGgccAGCagCUGgcGCUu -3'
miRNA:   3'- gGCA-----AGUGCGCGC---UCGagGACuuCGA- -5'
25675 3' -55.4 NC_005337.1 + 33450 0.76 0.37708
Target:  5'- aCGUUCAUGCGCGAGUUCUc-AGGCa -3'
miRNA:   3'- gGCAAGUGCGCGCUCGAGGacUUCGa -5'
25675 3' -55.4 NC_005337.1 + 35563 0.66 0.890808
Target:  5'- -aGggCGcCGCGCGAGCggaugCCUagcGAGGCg -3'
miRNA:   3'- ggCaaGU-GCGCGCUCGa----GGA---CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 38611 0.66 0.91606
Target:  5'- gCGUggGCGUGCuggggaacccgGAGCcCCUGGAGCc -3'
miRNA:   3'- gGCAagUGCGCG-----------CUCGaGGACUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.