miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 42493 0.69 0.775816
Target:  5'- gCCGUggaGCGCGCGGaacuGCUCCcGGAGaCg -3'
miRNA:   3'- -GGCAag-UGCGCGCU----CGAGGaCUUC-Ga -5'
25675 3' -55.4 NC_005337.1 + 822 0.71 0.656256
Target:  5'- gCCGUccgCGCGCGCGGGC-CCg--GGCUc -3'
miRNA:   3'- -GGCAa--GUGCGCGCUCGaGGacuUCGA- -5'
25675 3' -55.4 NC_005337.1 + 129584 0.71 0.666543
Target:  5'- gCCGUgcugcucaagUC-CGCGCGAGCgaCCgUGGAGCUc -3'
miRNA:   3'- -GGCA----------AGuGCGCGCUCGa-GG-ACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 101500 0.7 0.697199
Target:  5'- gCGcUCAUGCGCGAGCgcUCCgcgcggcugGAGGCc -3'
miRNA:   3'- gGCaAGUGCGCGCUCG--AGGa--------CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 41386 0.7 0.701254
Target:  5'- gCCGgcaacCGCGCGCGGGCagaugacguccggcgUCCgcgGGAGCg -3'
miRNA:   3'- -GGCaa---GUGCGCGCUCG---------------AGGa--CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 54537 0.7 0.737252
Target:  5'- gCCG--CACGUGCGGGCUCacggagaUGGAGUg -3'
miRNA:   3'- -GGCaaGUGCGCGCUCGAGg------ACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 52023 0.7 0.74608
Target:  5'- gCCGcgCGCGCGCggucaugGAGUUCCgggaccugcgGGAGCUg -3'
miRNA:   3'- -GGCaaGUGCGCG-------CUCGAGGa---------CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 66761 0.7 0.747056
Target:  5'- aCCGccgCACGCGCGGGC-CgCUG-GGCg -3'
miRNA:   3'- -GGCaa-GUGCGCGCUCGaG-GACuUCGa -5'
25675 3' -55.4 NC_005337.1 + 101236 0.69 0.766347
Target:  5'- gCGUcCGCGCGCGuGCUCgcgCUGGacGGCg -3'
miRNA:   3'- gGCAaGUGCGCGCuCGAG---GACU--UCGa -5'
25675 3' -55.4 NC_005337.1 + 130177 0.71 0.656256
Target:  5'- gCCGUgCGCGCG-GAGCacgcggagcucaUCCUGGAGUg -3'
miRNA:   3'- -GGCAaGUGCGCgCUCG------------AGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 23763 0.71 0.656256
Target:  5'- gCCGUguucacCACGCGCGAGCgCCacgucGAGCUg -3'
miRNA:   3'- -GGCAa-----GUGCGCGCUCGaGGac---UUCGA- -5'
25675 3' -55.4 NC_005337.1 + 57078 0.72 0.629439
Target:  5'- gCGUgcggaUCACGCGCGAGacggcgacgcugaucUUCCgGAAGCUg -3'
miRNA:   3'- gGCA-----AGUGCGCGCUC---------------GAGGaCUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 1128 0.76 0.411131
Target:  5'- gCCGcagCACGCGCGcgaccAGCUCCgcggGGAGCg -3'
miRNA:   3'- -GGCaa-GUGCGCGC-----UCGAGGa---CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 133454 0.76 0.411131
Target:  5'- cCCGggcccgCGCGCGCGgacGGCUCCgcGGAGCUg -3'
miRNA:   3'- -GGCaa----GUGCGCGC---UCGAGGa-CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 78263 0.75 0.419937
Target:  5'- gUCGUUCACGCGCGAgaGCUgCagGAAGUa -3'
miRNA:   3'- -GGCAAGUGCGCGCU--CGAgGa-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 91747 0.74 0.484593
Target:  5'- cCCGgccaCGCGCGCGuGCgCCUcGAAGCUg -3'
miRNA:   3'- -GGCaa--GUGCGCGCuCGaGGA-CUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 28449 0.74 0.494222
Target:  5'- uCC-UUCACGaCGauguacuuguCGAGCUCCUGGAGCa -3'
miRNA:   3'- -GGcAAGUGC-GC----------GCUCGAGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 82938 0.72 0.594413
Target:  5'- uUGUUCACGCGgGGGUgguUCCUGgcGUa -3'
miRNA:   3'- gGCAAGUGCGCgCUCG---AGGACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 121981 0.72 0.604694
Target:  5'- gCGgacaUCGUGCGCGAGCUCCUGcgcGCg -3'
miRNA:   3'- gGCa---AGUGCGCGCUCGAGGACuu-CGa -5'
25675 3' -55.4 NC_005337.1 + 133373 0.72 0.614996
Target:  5'- gCCGcgcucgUCGCGCuCGGGCUCCUGcucGGCg -3'
miRNA:   3'- -GGCa-----AGUGCGcGCUCGAGGACu--UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.