miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5'
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 1147 0.73 0.337687
Target:  5'- cAGcUCCGCGGGGAGCGCGccGgCGGAGc -3'
miRNA:   3'- -UCuGGGUGCCCCUCGUGCu-UgGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1175 0.68 0.589183
Target:  5'- cGGCCCGCuaGGcGGuGCGCGAGCgCGGc- -3'
miRNA:   3'- uCUGGGUG--CC-CCuCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 2576 0.66 0.729422
Target:  5'- cGGACuCCAUGGcGGccAGCGCGGuuauuGCCGGu- -3'
miRNA:   3'- -UCUG-GGUGCC-CC--UCGUGCU-----UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 2707 0.66 0.696941
Target:  5'- uGGGgaCGCGGaGGAGCACGAgcgcgacgacguccGCCGGu- -3'
miRNA:   3'- -UCUggGUGCC-CCUCGUGCU--------------UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 5720 0.68 0.589183
Target:  5'- cAGGCCggaGCGGGGAGCcacGCGGccguagcacccAUCGGGAa -3'
miRNA:   3'- -UCUGGg--UGCCCCUCG---UGCU-----------UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 15220 0.66 0.689967
Target:  5'- cGACacaCCGCGaGGAGguCGAACCGGu- -3'
miRNA:   3'- uCUG---GGUGCcCCUCguGCUUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 18459 0.67 0.659852
Target:  5'- gGGACUgGCGGGGAGUccGCGcGCCa--- -3'
miRNA:   3'- -UCUGGgUGCCCCUCG--UGCuUGGccuu -5'
25684 5' -59.7 NC_005337.1 + 20768 0.68 0.566169
Target:  5'- aGGGCCgcggccacgcgcuuCGCGGGGAcGgGCGuGCCGGAGc -3'
miRNA:   3'- -UCUGG--------------GUGCCCCU-CgUGCuUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 22744 0.72 0.352932
Target:  5'- cGACCUgcacGCGGcGGAGCGCGGGCuCGGu- -3'
miRNA:   3'- uCUGGG----UGCC-CCUCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 23168 0.67 0.669923
Target:  5'- uGACCCGCGuGGaGGCGCu-GCUGGAc -3'
miRNA:   3'- uCUGGGUGC-CCcUCGUGcuUGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 27912 0.67 0.649759
Target:  5'- cAGGuuCugGGGGcGCGCGAuCUGGAc -3'
miRNA:   3'- -UCUggGugCCCCuCGUGCUuGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 32090 0.69 0.519959
Target:  5'- cGGuACCgCGCGGGGAugacGUGCGAGgCGGAGa -3'
miRNA:   3'- -UC-UGG-GUGCCCCU----CGUGCUUgGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 33969 0.66 0.729422
Target:  5'- aGGACUCGCGGGGGaCGC-AGCCcaGGAu -3'
miRNA:   3'- -UCUGGGUGCCCCUcGUGcUUGG--CCUu -5'
25684 5' -59.7 NC_005337.1 + 36609 0.67 0.679964
Target:  5'- -cGCCCGCGGccuGGAGCGCGcgcgcGACCGa-- -3'
miRNA:   3'- ucUGGGUGCC---CCUCGUGC-----UUGGCcuu -5'
25684 5' -59.7 NC_005337.1 + 37412 0.66 0.709823
Target:  5'- -cAUCCGCGcGGAGuCGCGgAGCCGGGGg -3'
miRNA:   3'- ucUGGGUGCcCCUC-GUGC-UUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 37478 1.05 0.001988
Target:  5'- cAGACCCACGGGGAGCACGAACCGGAAc -3'
miRNA:   3'- -UCUGGGUGCCCCUCGUGCUUGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.