miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 5' -59.7 NC_005337.1 + 18459 0.67 0.659852
Target:  5'- gGGACUgGCGGGGAGUccGCGcGCCa--- -3'
miRNA:   3'- -UCUGGgUGCCCCUCG--UGCuUGGccuu -5'
25684 5' -59.7 NC_005337.1 + 98906 0.69 0.55921
Target:  5'- cGAgCC-CGGGGAGUACacgguGAGCCGGc- -3'
miRNA:   3'- uCUgGGuGCCCCUCGUG-----CUUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 20768 0.68 0.566169
Target:  5'- aGGGCCgcggccacgcgcuuCGCGGGGAcGgGCGuGCCGGAGc -3'
miRNA:   3'- -UCUGG--------------GUGCCCCU-CgUGCuUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 49924 0.68 0.579153
Target:  5'- cAGGCgcgagCGCGGGGAcaGCACGAccagGCUGGAGg -3'
miRNA:   3'- -UCUGg----GUGCCCCU--CGUGCU----UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 5720 0.68 0.589183
Target:  5'- cAGGCCggaGCGGGGAGCcacGCGGccguagcacccAUCGGGAa -3'
miRNA:   3'- -UCUGGg--UGCCCCUCG---UGCU-----------UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1175 0.68 0.589183
Target:  5'- cGGCCCGCuaGGcGGuGCGCGAGCgCGGc- -3'
miRNA:   3'- uCUGGGUG--CC-CCuCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 27912 0.67 0.649759
Target:  5'- cAGGuuCugGGGGcGCGCGAuCUGGAc -3'
miRNA:   3'- -UCUggGugCCCCuCGUGCUuGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5'
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 109568 0.69 0.529678
Target:  5'- cGGAacUCCGCGGGGuGCACGAuCCGc-- -3'
miRNA:   3'- -UCU--GGGUGCCCCuCGUGCUuGGCcuu -5'
25684 5' -59.7 NC_005337.1 + 60219 0.69 0.519959
Target:  5'- cGGCUUggGCGcGGGGGCugGGGCUGGGGu -3'
miRNA:   3'- uCUGGG--UGC-CCCUCGugCUUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 54087 0.69 0.510311
Target:  5'- -cGCCCGCGGcaGGAGCGCGuccgcgcGCCGGc- -3'
miRNA:   3'- ucUGGGUGCC--CCUCGUGCu------UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 64925 0.73 0.345249
Target:  5'- cGGCCCGCGcGGGAaaGCGCGcGCCGuGAu -3'
miRNA:   3'- uCUGGGUGC-CCCU--CGUGCuUGGC-CUu -5'
25684 5' -59.7 NC_005337.1 + 22744 0.72 0.352932
Target:  5'- cGACCUgcacGCGGcGGAGCGCGGGCuCGGu- -3'
miRNA:   3'- uCUGGG----UGCC-CCUCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 115363 0.72 0.360735
Target:  5'- -uGCCCGCggacgugguGGGGAGCACGcACCuGGAAg -3'
miRNA:   3'- ucUGGGUG---------CCCCUCGUGCuUGG-CCUU- -5'
25684 5' -59.7 NC_005337.1 + 58195 0.72 0.360735
Target:  5'- cAGGCCCGCGuGGccGAGCggaagauggGCGAGCUGGAGg -3'
miRNA:   3'- -UCUGGGUGC-CC--CUCG---------UGCUUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 48012 0.71 0.427358
Target:  5'- uGGAUCCGCGcgcugcGGAGCACGAACaCGGc- -3'
miRNA:   3'- -UCUGGGUGCc-----CCUCGUGCUUG-GCCuu -5'
25684 5' -59.7 NC_005337.1 + 84453 0.7 0.481837
Target:  5'- aGGAgCCCGCGGaGGGCGCG-GCCGGc- -3'
miRNA:   3'- -UCU-GGGUGCCcCUCGUGCuUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 74169 0.7 0.491245
Target:  5'- cGugCUGCGGGaGGCGCGcucgGGCCGGGAg -3'
miRNA:   3'- uCugGGUGCCCcUCGUGC----UUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 42445 0.7 0.500738
Target:  5'- cGGGCCgagUACGGGGAGUucGCGAAgCGGu- -3'
miRNA:   3'- -UCUGG---GUGCCCCUCG--UGCUUgGCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.