miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 21372 0.67 0.605168
Target:  5'- uGCGCAGaucaGCGCccaagaCGcGAUCUCGGcGGc -3'
miRNA:   3'- gCGCGUCg---CGCGc-----GCaCUAGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 23052 0.66 0.683948
Target:  5'- gGCGCccuucaGGaugGCGCuCGUGGgcggCUCGGGGu -3'
miRNA:   3'- gCGCG------UCg--CGCGcGCACUa---GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 25113 0.71 0.419179
Target:  5'- gGCGCGGCGCGCGCGgacgcgUGAauaUUCGGc- -3'
miRNA:   3'- gCGCGUCGCGCGCGC------ACUa--GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 25356 0.68 0.58552
Target:  5'- aCGCGCGGaagaagugGCGCuGUGUGAUCUUuaaGGGc -3'
miRNA:   3'- -GCGCGUCg-------CGCG-CGCACUAGAG---CCCc -5'
25687 5' -60.9 NC_005337.1 + 28495 0.7 0.480867
Target:  5'- cCGCGCGGCGCGCG-GUcGcgCggcacugcgUGGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCgCA-CuaGa--------GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 29218 0.7 0.436321
Target:  5'- uGCGCAGCGcCGCGCGg---C-CGGGc -3'
miRNA:   3'- gCGCGUCGC-GCGCGCacuaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 29722 0.73 0.311434
Target:  5'- gCGCGCAcGCGCGCGCgGUGuug-CGGcGGa -3'
miRNA:   3'- -GCGCGU-CGCGCGCG-CACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 30145 0.67 0.615023
Target:  5'- aCGCGCuccaCGCGCGCGggguaGAUgUCGGa- -3'
miRNA:   3'- -GCGCGuc--GCGCGCGCa----CUAgAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 30999 0.66 0.703397
Target:  5'- uCGCGgacCAGCGCGaCGC-UGAUCUCGu-- -3'
miRNA:   3'- -GCGC---GUCGCGC-GCGcACUAGAGCccc -5'
25687 5' -60.9 NC_005337.1 + 31035 0.66 0.713042
Target:  5'- cCGCGCgGGCGCGCaccaGCGgcaGGUUgcagCGGGc -3'
miRNA:   3'- -GCGCG-UCGCGCG----CGCa--CUAGa---GCCCc -5'
25687 5' -60.9 NC_005337.1 + 31908 0.73 0.311434
Target:  5'- aGCGCGGUggccagGUGCGCGgc--CUCGGGGg -3'
miRNA:   3'- gCGCGUCG------CGCGCGCacuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 33604 0.67 0.605168
Target:  5'- gCGCGCGGCGCGaacgcgGCGUGGUucacgaugugCUUGGu- -3'
miRNA:   3'- -GCGCGUCGCGCg-----CGCACUA----------GAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 34969 0.66 0.674159
Target:  5'- aGCGCAGCGaGUGCG-GAaCgCGGGu -3'
miRNA:   3'- gCGCGUCGCgCGCGCaCUaGaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 35258 0.67 0.615023
Target:  5'- aGCGCcucgcaGGC-CGCGCGcac-CUCGGGGg -3'
miRNA:   3'- gCGCG------UCGcGCGCGCacuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 35557 0.66 0.713042
Target:  5'- aCGCGCAGgGCGcCGCGcGAg--CGGa- -3'
miRNA:   3'- -GCGCGUCgCGC-GCGCaCUagaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 36511 1.1 0.000866
Target:  5'- uCGCGCAGCGCGCGCGUGAUCUCGGGGg -3'
miRNA:   3'- -GCGCGUCGCGCGCGCACUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 36896 0.69 0.490043
Target:  5'- uCGCGCGGCGCG-GCGUGGcCgUCaGGa -3'
miRNA:   3'- -GCGCGUCGCGCgCGCACUaG-AGcCCc -5'
25687 5' -60.9 NC_005337.1 + 37094 0.66 0.664339
Target:  5'- -cCGCAGCGUGCGgaaGU--UgUCGGGGg -3'
miRNA:   3'- gcGCGUCGCGCGCg--CAcuAgAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 37218 0.7 0.480867
Target:  5'- gCGCGCcGCGCGUGCGUGG-CgaugaGGuGGc -3'
miRNA:   3'- -GCGCGuCGCGCGCGCACUaGag---CC-CC- -5'
25687 5' -60.9 NC_005337.1 + 37407 0.67 0.654494
Target:  5'- cCGCGCAuccGCGCGgaguCGCG-GAgC-CGGGGg -3'
miRNA:   3'- -GCGCGU---CGCGC----GCGCaCUaGaGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.