miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 859 0.67 0.654494
Target:  5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3'
miRNA:   3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 859 0.67 0.654494
Target:  5'- gCGgGCAGCGCGgGCGcGG-C-CGGGcGg -3'
miRNA:   3'- -GCgCGUCGCGCgCGCaCUaGaGCCC-C- -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 989 0.67 0.654494
Target:  5'- gGCGCGGCGCGCG-GaGGg--CGGGc -3'
miRNA:   3'- gCGCGUCGCGCGCgCaCUagaGCCCc -5'
25687 5' -60.9 NC_005337.1 + 1127 0.68 0.57574
Target:  5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3'
miRNA:   3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 1127 0.68 0.57574
Target:  5'- aGcCGCAGCaCGCGCGcGAccagcUCcgCGGGGa -3'
miRNA:   3'- gC-GCGUCGcGCGCGCaCU-----AGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 4501 0.71 0.391808
Target:  5'- aCGUGCAGCgGCGUGUucccgaacacguugGUGGUCaUGGGGu -3'
miRNA:   3'- -GCGCGUCG-CGCGCG--------------CACUAGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 5574 0.72 0.339944
Target:  5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3'
miRNA:   3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 7081 0.66 0.693696
Target:  5'- aCGUGCAGCGCGgucaugucguaCGCGUcaGA-CUCGcGGa -3'
miRNA:   3'- -GCGCGUCGCGC-----------GCGCA--CUaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 9369 0.67 0.644633
Target:  5'- gCGCGCuGCGCGUucgagccagacgGCGaGGUCcUCGGaGGc -3'
miRNA:   3'- -GCGCGuCGCGCG------------CGCaCUAG-AGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 9658 0.7 0.436321
Target:  5'- --aGCAGCcCGCGCGUGAgCUCGGu- -3'
miRNA:   3'- gcgCGUCGcGCGCGCACUaGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 10237 0.69 0.499299
Target:  5'- cCGCgGCAG-GCGCGCGgccuUCgCGGGGc -3'
miRNA:   3'- -GCG-CGUCgCGCGCGCacu-AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 10324 0.66 0.663355
Target:  5'- uGUGCAGCGCGaccggcuCGCG-GggCgUGGGGa -3'
miRNA:   3'- gCGCGUCGCGC-------GCGCaCuaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 10445 0.68 0.595332
Target:  5'- gGCGguGCGCGCGuCGUGcgC-CaGGa -3'
miRNA:   3'- gCGCguCGCGCGC-GCACuaGaGcCCc -5'
25687 5' -60.9 NC_005337.1 + 10982 0.72 0.339208
Target:  5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 12585 0.7 0.466364
Target:  5'- gCGCGCguucacguuGGCGCccGCGCG-GAUgagcagguccacgacCUCGGGGg -3'
miRNA:   3'- -GCGCG---------UCGCG--CGCGCaCUA---------------GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 12708 0.67 0.62489
Target:  5'- gGCGUccGCGCGCGCGccGcgCUCGaGGa -3'
miRNA:   3'- gCGCGu-CGCGCGCGCa-CuaGAGC-CCc -5'
25687 5' -60.9 NC_005337.1 + 13821 0.71 0.386153
Target:  5'- gCGCGCucgAGCGCGCcccGCaggGA-CUCGGGGg -3'
miRNA:   3'- -GCGCG---UCGCGCG---CGca-CUaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 18713 0.67 0.615023
Target:  5'- aCGCGgcCAGuCGCGCGCuGUG--CUCGGaGGa -3'
miRNA:   3'- -GCGC--GUC-GCGCGCG-CACuaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 18850 0.66 0.674159
Target:  5'- uCGC-CAGCaCGCGCcgcaUGAUaUCGGGGg -3'
miRNA:   3'- -GCGcGUCGcGCGCGc---ACUAgAGCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.