Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 35557 | 0.66 | 0.713042 |
Target: 5'- aCGCGCAGgGCGcCGCGcGAg--CGGa- -3' miRNA: 3'- -GCGCGUCgCGC-GCGCaCUagaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 68358 | 0.66 | 0.683948 |
Target: 5'- gGCGCGGuCGCGauCGCGUGGag-CGaGGGc -3' miRNA: 3'- gCGCGUC-GCGC--GCGCACUagaGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 55727 | 0.66 | 0.674159 |
Target: 5'- aCGCGCacGGCGCGCcCGUGua--CGGGu -3' miRNA: 3'- -GCGCG--UCGCGCGcGCACuagaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 60200 | 0.66 | 0.693696 |
Target: 5'- gGUGCGGCGCGgGgGggGAcggCUUGGGc -3' miRNA: 3'- gCGCGUCGCGCgCgCa-CUa--GAGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 31035 | 0.66 | 0.713042 |
Target: 5'- cCGCGCgGGCGCGCaccaGCGgcaGGUUgcagCGGGc -3' miRNA: 3'- -GCGCG-UCGCGCG----CGCa--CUAGa---GCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 56038 | 0.66 | 0.703397 |
Target: 5'- aCGUGCAGgGCGUGCGg---UUCGuGGa -3' miRNA: 3'- -GCGCGUCgCGCGCGCacuaGAGC-CCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 128124 | 0.66 | 0.716883 |
Target: 5'- uGCGCGGCuGC-CGCGUGAacgcgcgaaacgcgCUCGGa- -3' miRNA: 3'- gCGCGUCG-CGcGCGCACUa-------------GAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 95604 | 0.66 | 0.721668 |
Target: 5'- gGUGCAGCaGCGCGCcauggcggcguccGUGggCgCGGGc -3' miRNA: 3'- gCGCGUCG-CGCGCG-------------CACuaGaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 84044 | 0.66 | 0.713042 |
Target: 5'- gGCGgAG-GCGCGCacGAcgccCUCGGGGa -3' miRNA: 3'- gCGCgUCgCGCGCGcaCUa---GAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 88872 | 0.66 | 0.692724 |
Target: 5'- cCGCGCAGUGgaGCGUcagcaccgggucgGUGGUCUCGcaGGu -3' miRNA: 3'- -GCGCGUCGCg-CGCG-------------CACUAGAGCc-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 41285 | 0.66 | 0.674159 |
Target: 5'- uCGCGCAGCGCcaucacggccaGCGCGUuGUCcagCGuGGc -3' miRNA: 3'- -GCGCGUCGCG-----------CGCGCAcUAGa--GC-CCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 34969 | 0.66 | 0.674159 |
Target: 5'- aGCGCAGCGaGUGCG-GAaCgCGGGu -3' miRNA: 3'- gCGCGUCGCgCGCGCaCUaGaGCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 128024 | 0.66 | 0.693696 |
Target: 5'- gGCGcCAGCGUcaGCGaCGcUGAcUCgcgCGGGGa -3' miRNA: 3'- gCGC-GUCGCG--CGC-GC-ACU-AGa--GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 37094 | 0.66 | 0.664339 |
Target: 5'- -cCGCAGCGUGCGgaaGU--UgUCGGGGg -3' miRNA: 3'- gcGCGUCGCGCGCg--CAcuAgAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 42405 | 0.66 | 0.721668 |
Target: 5'- gCGCGCGGCcucgcuguGCGCcggcuucgGCGUGAgCUuccgggccgaguaCGGGGa -3' miRNA: 3'- -GCGCGUCG--------CGCG--------CGCACUaGA-------------GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 77907 | 0.66 | 0.664339 |
Target: 5'- aCGCGCAGCGCGUGCacuacgUCGGu- -3' miRNA: 3'- -GCGCGUCGCGCGCGcacuagAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 81783 | 0.66 | 0.664339 |
Target: 5'- uGCGCAugGCGCGCaUGAgccggcUCUCGcGGGc -3' miRNA: 3'- gCGCGUcgCGCGCGcACU------AGAGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 93358 | 0.66 | 0.722623 |
Target: 5'- aCGCGCAGCGCcacCGgGUGAUgaugCUCGa-- -3' miRNA: 3'- -GCGCGUCGCGc--GCgCACUA----GAGCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 77463 | 0.66 | 0.664339 |
Target: 5'- uCGUgGUGGCGUGCGCGgcgacgcGUCcCGGGGc -3' miRNA: 3'- -GCG-CGUCGCGCGCGCac-----UAGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 38254 | 0.66 | 0.674159 |
Target: 5'- aGaCGCGGCGCGCGUucGcgCUCGcGGc -3' miRNA: 3'- gC-GCGUCGCGCGCGcaCuaGAGC-CCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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