miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25687 5' -60.9 NC_005337.1 + 36511 1.1 0.000866
Target:  5'- uCGCGCAGCGCGCGCGUGAUCUCGGGGg -3'
miRNA:   3'- -GCGCGUCGCGCGCGCACUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 42531 0.8 0.119748
Target:  5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3'
miRNA:   3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 100225 0.78 0.142648
Target:  5'- gGCGCcGCGUGCGCGUGAUCgCGGu- -3'
miRNA:   3'- gCGCGuCGCGCGCGCACUAGaGCCcc -5'
25687 5' -60.9 NC_005337.1 + 90648 0.78 0.161389
Target:  5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3'
miRNA:   3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5'
25687 5' -60.9 NC_005337.1 + 86184 0.76 0.2208
Target:  5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3'
miRNA:   3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5'
25687 5' -60.9 NC_005337.1 + 121569 0.76 0.2208
Target:  5'- aGCGCGGCGCGCGCGcgGAcgCcacCGGGa -3'
miRNA:   3'- gCGCGUCGCGCGCGCa-CUa-Ga--GCCCc -5'
25687 5' -60.9 NC_005337.1 + 38605 0.75 0.22607
Target:  5'- aGCGCAGCGUGgGCGUGc---UGGGGa -3'
miRNA:   3'- gCGCGUCGCGCgCGCACuagaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 97068 0.75 0.231446
Target:  5'- aCGCGCGGCGCGCG-GUGGUCUgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCGCgCACUAGA-GCccc -5'
25687 5' -60.9 NC_005337.1 + 129533 0.75 0.254035
Target:  5'- gCGCGCGGCGCgaGCGUccGUGAUCUCGa-- -3'
miRNA:   3'- -GCGCGUCGCG--CGCG--CACUAGAGCccc -5'
25687 5' -60.9 NC_005337.1 + 98879 0.74 0.265993
Target:  5'- cCGCGCcGCGCGCGCG-GAcugcgcgcUCgagccCGGGGa -3'
miRNA:   3'- -GCGCGuCGCGCGCGCaCU--------AGa----GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 59739 0.74 0.284779
Target:  5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3'
miRNA:   3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 102017 0.74 0.291269
Target:  5'- uCGUGCAGCGCGCggGCGUGAUCgCGu-- -3'
miRNA:   3'- -GCGCGUCGCGCG--CGCACUAGaGCccc -5'
25687 5' -60.9 NC_005337.1 + 29722 0.73 0.311434
Target:  5'- gCGCGCAcGCGCGCGCgGUGuug-CGGcGGa -3'
miRNA:   3'- -GCGCGU-CGCGCGCG-CACuagaGCC-CC- -5'
25687 5' -60.9 NC_005337.1 + 31908 0.73 0.311434
Target:  5'- aGCGCGGUggccagGUGCGCGgc--CUCGGGGg -3'
miRNA:   3'- gCGCGUCG------CGCGCGCacuaGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 10982 0.72 0.339208
Target:  5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3'
miRNA:   3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5'
25687 5' -60.9 NC_005337.1 + 5574 0.72 0.339944
Target:  5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3'
miRNA:   3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5'
25687 5' -60.9 NC_005337.1 + 68638 0.72 0.362538
Target:  5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3'
miRNA:   3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 104198 0.72 0.362538
Target:  5'- uGCGCgAGCGC-CGCGccAUcCUCGGGGa -3'
miRNA:   3'- gCGCG-UCGCGcGCGCacUA-GAGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 38479 0.71 0.382946
Target:  5'- gCGCGCcgGGCGCGCGCGUcgccgagcuggccGAcgacgucgccgcgaUCgCGGGGa -3'
miRNA:   3'- -GCGCG--UCGCGCGCGCA-------------CU--------------AGaGCCCC- -5'
25687 5' -60.9 NC_005337.1 + 13821 0.71 0.386153
Target:  5'- gCGCGCucgAGCGCGCcccGCaggGA-CUCGGGGg -3'
miRNA:   3'- -GCGCG---UCGCGCG---CGca-CUaGAGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.